Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | Zm00001d004812_P002 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | Zm00001d023560_P002 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | Zm00001d053016_P002 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0111600-01 | Rice | nucleus | 66.97 | 69.52 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 69.72 | 67.86 |
| Os11t0112000-01 | Rice | mitochondrion | 55.96 | 67.78 |
| Solyc06g050870.2.1 | Tomato | plastid | 44.95 | 66.22 |
| KRH73222 | Soybean | mitochondrion, plastid | 39.45 | 58.9 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 42.2 | 58.23 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 50.46 | 57.29 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 50.46 | 57.29 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 49.54 | 56.25 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 44.04 | 54.55 |
| GSMUA_AchrUn_... | Banana | plastid | 44.04 | 53.93 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 44.95 | 51.04 |
| PGSC0003DMT400071904 | Potato | cytosol | 35.78 | 48.75 |
| KRH31217 | Soybean | plastid | 44.04 | 48.0 |
| KRG97658 | Soybean | plastid | 42.2 | 46.0 |
| CDX86141 | Canola | cytosol | 31.19 | 35.42 |
| CDX80621 | Canola | cytosol | 31.19 | 35.42 |
| Bra009944.1-P | Field mustard | cytosol | 31.19 | 35.42 |
| Zm00001d050935_P001 | Maize | cytosol | 32.11 | 35.35 |
| CDY25023 | Canola | cytosol | 30.28 | 34.38 |
| CDY05562 | Canola | cytosol | 29.36 | 33.33 |
| Bra020576.1-P | Field mustard | cytosol | 29.36 | 33.33 |
| AT5G27760.1 | Thale cress | cytosol | 29.36 | 33.33 |
| AT3G05550.1 | Thale cress | cytosol | 29.36 | 32.99 |
| Zm00001d007153_P001 | Maize | mitochondrion | 30.28 | 32.35 |
| Zm00001d017060_P001 | Maize | cytosol | 31.19 | 30.63 |
Protein Annotations
| EMBL:EU964579 | EnsemblPlants:Zm00001d052333_P001 | EnsemblPlants:Zm00001d052333_T001 | EnsemblPlantsGene:Zm00001d052333 | EntrezGene:100276769 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 |
| PFAM:PF04588 | PFscan:PS51503 | ProteinID:AQK56995.1 | ProteinID:AQK56996.1 | SEG:seg | UniParc:UPI000182E2C0 |
| UniProt:B6THW4 | MapMan:35.2 | : | : | : | : |
Description
Hypoxia-responsive family protein
Coordinates
chr4:-:187330814..187332060
Molecular Weight (calculated)
12158.2 Da
IEP (calculated)
9.986
GRAVY (calculated)
-0.548
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MERMSSSVQS WVEEHKLSSI GAVWATAVGA SVAYSRRRAP ARATSLRLIH ARMHAQALTL AVLGGAALAH RYYGSSERRQ RQEDLDYGFK SQLPPATDAE
101: GNENERWSW
101: GNENERWSW
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.