Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050870.2.1 | Tomato | plastid | 78.48 | 83.78 |
| KRH73222 | Soybean | mitochondrion, plastid | 63.29 | 68.49 |
| KRH31217 | Soybean | plastid | 74.68 | 59.0 |
| PGSC0003DMT400071904 | Potato | cytosol | 59.49 | 58.75 |
| GSMUA_AchrUn_... | Banana | plastid | 64.56 | 57.3 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 63.29 | 56.82 |
| KRG97658 | Soybean | plastid | 68.35 | 54.0 |
| EES09115 | Sorghum | nucleus, plastid | 60.76 | 44.04 |
| Zm00001d052333_P001 | Maize | cytosol | 58.23 | 42.2 |
| Os12t0111600-01 | Rice | nucleus | 55.7 | 41.9 |
| VIT_14s0060g02300.t01 | Wine grape | plastid | 46.84 | 40.66 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 55.7 | 39.29 |
| Os11t0112000-01 | Rice | mitochondrion | 44.3 | 38.89 |
| VIT_05s0077g02320.t01 | Wine grape | cytosol | 44.3 | 36.08 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 34.18 | 28.12 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 34.18 | 28.12 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 32.91 | 27.08 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 31.65 | 26.04 |
Protein Annotations
| EntrezGene:100267335 | wikigene:100267335 | MapMan:35.2 | ProteinID:CBI25396 | ProteinID:CBI25396.3 | UniProt:D7T4G4 |
| EMBL:FN595514 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031305 |
| GO:GO:0033617 | GO:GO:0097249 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | EntrezGene:LOC100267335 | wikigene:LOC100267335 |
| PFAM:PF04588 | PFscan:PS51503 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 | UniParc:UPI00015CA97D | ArrayExpress:VIT_13s0067g02300 |
| EnsemblPlantsGene:VIT_13s0067g02300 | EnsemblPlants:VIT_13s0067g02300.t01 | unigene:Vvi.3051 | RefSeq:XP_002278922 | RefSeq:XP_002278922.1 | : |
Description
No Description!
Coordinates
chr13:-:1284880..1285561
Molecular Weight (calculated)
8538.3 Da
IEP (calculated)
10.521
GRAVY (calculated)
-0.097
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MEALQSWVSE HKLTSIGTVW ASAVGASLAY NSRAKSPLKP SLRLIHARMH AQALTLAVLS GAAAYHYYEK RVGKKGETA
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.