Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G148900.1 | Wheat | cytosol | 90.62 | 90.62 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 89.58 | 89.58 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 86.46 | 86.46 |
| Os12t0111600-01 | Rice | nucleus | 59.38 | 54.29 |
| Os11t0112000-01 | Rice | mitochondrion | 45.83 | 48.89 |
| EES09115 | Sorghum | nucleus, plastid | 54.17 | 47.71 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 54.17 | 46.43 |
| Zm00001d052333_P001 | Maize | cytosol | 51.04 | 44.95 |
| KRH73222 | Soybean | mitochondrion, plastid | 27.08 | 35.62 |
| Solyc06g050870.2.1 | Tomato | plastid | 26.04 | 33.78 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 27.08 | 32.91 |
| KRH31217 | Soybean | plastid | 32.29 | 31.0 |
| GSMUA_AchrUn_... | Banana | plastid | 27.08 | 29.21 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 26.04 | 28.41 |
| KRG97658 | Soybean | plastid | 28.12 | 27.0 |
| PGSC0003DMT400071904 | Potato | cytosol | 20.83 | 25.0 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 23.96 | 23.23 |
| AT3G05550.1 | Thale cress | cytosol | 22.92 | 22.68 |
| CDX86141 | Canola | cytosol | 21.88 | 21.88 |
| CDX80621 | Canola | cytosol | 21.88 | 21.88 |
| Bra009944.1-P | Field mustard | cytosol | 21.88 | 21.88 |
| CDY25023 | Canola | cytosol | 20.83 | 20.83 |
| CDY05562 | Canola | cytosol | 20.83 | 20.83 |
| Bra020576.1-P | Field mustard | cytosol | 20.83 | 20.83 |
| AT5G27760.1 | Thale cress | cytosol | 20.83 | 20.83 |
| TraesCS2D01G111700.1 | Wheat | cytosol | 20.83 | 19.42 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G143900.1 | EnsemblPlantsGene:TraesCS5D01G143900 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 | PFscan:PS51257 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:230042688..230043245
Molecular Weight (calculated)
10489.2 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.412
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKMSSSVQS WADQHKLATV GAMWTMAVGA SVACGRRRGR AAGFTVAAAL GGAALAHHYY AAKRREEEAR CFELDFYSQL PAATGEDGQE NERWSY
1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD
Arabidopsis Description
F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.