Factsheet for Bra020576.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
peroxisome 1
nucleus 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27760.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05562	Canola	cytosol	100.0	100.0
Bra009944.1-P	Field mustard	cytosol	96.88	96.88
AT5G27760.1	Thale cress	cytosol	92.71	92.71
KRG92905	Soybean	cytosol	66.67	77.11
VIT_05s0077g02320.t01	Wine grape	cytosol	70.83	70.1
PGSC0003DMT400063585	Potato	cytosol	70.83	68.0
Solyc01g099820.2.1	Tomato	cytosol	69.79	67.0
GSMUA_Achr7P03750_001	Banana	cytosol	59.38	65.52
GSMUA_Achr3P24030_001	Banana	cytosol	65.62	64.29
GSMUA_Achr8P22530_001	Banana	cytosol	66.67	63.37
KRH33884	Soybean	cytosol	44.79	62.32
Zm00001d050935_P001	Maize	cytosol	60.42	58.59
TraesCS2A01G440800.1	Wheat	cytosol, mitochondrion, plastid	59.38	57.58
TraesCS2D01G438000.1	Wheat	cytosol	59.38	57.58
TraesCS2B01G460200.1	Wheat	cytosol	57.29	55.56
Os02t0592400-01	Rice	cytosol	61.46	55.14
KRH73222	Soybean	mitochondrion, plastid	41.67	54.79
EES05347	Sorghum	cytosol	61.46	54.13
HORVU7Hr1G087030.1	Barley	extracellular	32.29	52.54
Zm00001d017060_P001	Maize	cytosol	60.42	52.25
GSMUA_AchrUn_...	Banana	plastid	40.62	43.82
KRH31217	Soybean	plastid	38.54	37.0
HORVU2Hr1G102130.5	Barley	cytosol	45.83	36.67
GSMUA_Achr5P29560_001	Banana	plastid	33.33	36.36
KRG97658	Soybean	plastid	36.46	35.0
Os11t0112000-01	Rice	mitochondrion	30.21	32.22
Os12t0111600-01	Rice	nucleus	34.38	31.43
EES09115	Sorghum	nucleus, plastid	33.33	29.36
Zm00001d052333_P001	Maize	cytosol	33.33	29.36
Zm00001d036839_P001	Maize	cytosol, nucleus, plastid	31.25	26.79
HORVU5Hr1G047000.1	Barley	cytosol, plastid	22.92	22.92
TraesCS5A01G148900.1	Wheat	cytosol	21.88	21.88
TraesCS5B01G147500.1	Wheat	cytosol	21.88	21.88
TraesCS5D01G143900.1	Wheat	cytosol	20.83	20.83

Protein Annotations

EnsemblPlants:Bra020576.1	EnsemblPlants:Bra020576.1-P	EnsemblPlantsGene:Bra020576	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Hypoxia_induced_domain	InterPro:IPR007667	PANTHER:PTHR28018	PANTHER:PTHR28018:SF1	PFAM:PF04588	PFscan:PS51503
SEG:seg	UniParc:UPI0002546AAD	UniProt:M4DVN2	MapMan:35.2	:	:

Description

AT5G27760 (E=6e-038) | hypoxia-responsive family protein

Coordinates

chrA02:+:24468157..24469058

Molecular Weight (calculated)

10715.9 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.278

Length

96 amino acids

Sequence
(BLAST)

1: MAESKTKFAE IREWIVDHKL RTVGCLWLSG ISGSIAYNWS KPGMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKTGA TDRYPKFLKP DNLNKD

Best Arabidopsis Sequence Match ( AT5G27760.1 )
(BLAST)

1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD

Arabidopsis Description

Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.