Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33884 | Soybean | cytosol | 50.85 | 43.48 |
| KRG92905 | Soybean | cytosol | 54.24 | 38.55 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 61.02 | 36.36 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 61.02 | 36.36 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 61.02 | 36.36 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 52.54 | 35.63 |
| Zm00001d050935_P001 | Maize | cytosol | 59.32 | 35.35 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 57.63 | 34.69 |
| Os02t0592400-01 | Rice | cytosol | 61.02 | 33.64 |
| CDX86141 | Canola | cytosol | 54.24 | 33.33 |
| Bra009944.1-P | Field mustard | cytosol | 54.24 | 33.33 |
| VIT_14s0060g02300.t01 | Wine grape | plastid | 50.85 | 32.97 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 55.93 | 32.67 |
| CDY25023 | Canola | cytosol | 52.54 | 32.29 |
| CDY05562 | Canola | cytosol | 52.54 | 32.29 |
| CDX80621 | Canola | cytosol | 52.54 | 32.29 |
| Bra020576.1-P | Field mustard | cytosol | 52.54 | 32.29 |
| AT5G27760.1 | Thale cress | cytosol | 50.85 | 31.25 |
| EES05347 | Sorghum | cytosol | 57.63 | 31.19 |
| AT3G05550.1 | Thale cress | cytosol | 50.85 | 30.93 |
| Zm00001d017060_P001 | Maize | cytosol | 57.63 | 30.63 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 55.93 | 27.5 |
| HORVU2Hr1G019250.3 | Barley | cytosol | 47.46 | 18.79 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 13.56 | 8.33 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G087030.1 | EnsemblPlantsGene:HORVU7Hr1G087030 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF1 | UniParc:UPI000B47C401 | UniProt:A0A287X6Z3 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:524356009..524356469
Molecular Weight (calculated)
6666.4 Da
IEP (calculated)
12.294
GRAVY (calculated)
0.132
Length
59 amino acids
Sequence
(BLAST)
(BLAST)
1: SPRFIRHVCI LICGVLLFRR GAGCLWLTGI SSSIAYNWSR PNMKTSVKLI HGRPRAQAR
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARSYQWLK LLKNLVLISV
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.