Factsheet for Os02t0592400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27760.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G27760.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050935_P001	Maize	cytosol	85.05	91.92
EES05347	Sorghum	cytosol	87.85	86.24
Zm00001d017060_P001	Maize	cytosol	87.85	84.68
TraesCS2D01G438000.1	Wheat	cytosol	75.7	81.82
TraesCS2A01G440800.1	Wheat	cytosol, mitochondrion, plastid	74.77	80.81
TraesCS2B01G460200.1	Wheat	cytosol	73.83	79.8
KRG92905	Soybean	cytosol	57.94	74.7
GSMUA_Achr7P03750_001	Banana	cytosol	55.14	67.82
KRH33884	Soybean	cytosol	42.06	65.22
GSMUA_Achr8P22530_001	Banana	cytosol	59.81	63.37
GSMUA_Achr3P24030_001	Banana	cytosol	57.94	63.27
VIT_14s0060g02300.t01	Wine grape	plastid	53.27	62.64
AT3G05550.1	Thale cress	cytosol	56.07	61.86
AT5G27760.1	Thale cress	cytosol	55.14	61.46
CDY05562	Canola	cytosol	55.14	61.46
CDX86141	Canola	cytosol	55.14	61.46
Bra020576.1-P	Field mustard	cytosol	55.14	61.46
Bra009944.1-P	Field mustard	cytosol	55.14	61.46
Os07t0673900-01	Rice	cytosol	57.94	61.39
HORVU7Hr1G087030.1	Barley	extracellular	33.64	61.02
CDY25023	Canola	cytosol	54.21	60.42
CDX80621	Canola	cytosol	54.21	60.42
HORVU2Hr1G102130.5	Barley	cytosol	62.62	55.83
Os11t0112000-01	Rice	mitochondrion	28.04	33.33
Os12t0111600-01	Rice	nucleus	32.71	33.33

Protein Annotations

MapMan:35.2	EntrezGene:4329836	EMBL:AK105384	EMBL:AK121468	ProteinID:BAD34085.1	ProteinID:BAF09207.1
ProteinID:BAS79517.1	ProteinID:EAZ23638.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0031305	GO:GO:0033617	GO:GO:0097249	InterPro:Hypoxia_induced_domain	InterPro:IPR007667	EnsemblPlantsGene:Os02g0592400
EnsemblPlants:Os02t0592400-01	PFAM:PF04588	PFscan:PS51503	PANTHER:PTHR28018	PANTHER:PTHR28018:SF1	UniProt:Q69L71
UniParc:UPI000035AFA8	RefSeq:XP_015622942.1	:	:	:	:

Description

Hypoxia-Induced Gene Domain 4, Hypoxia-Induced Gene Domain Protein 4Hypoxia induced protein conserved region family protein. (Os02t0592400-01)

Coordinates

chr2:+:22927598..22930325

Molecular Weight (calculated)

11867.3 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.297

Length

107 amino acids

Sequence
(BLAST)

001: MGEEAAKQMA EAPGKIESMR KWVIDHKLRA VGCLWLTGIS SSIAYNWSRP NMKTSVKIIH ARLHAQALTL AALVGSAMVE YYDAKYGTSG PKVDKYTSQY
101: LAHSHKD

Best Arabidopsis Sequence Match ( AT3G05550.1 )
(BLAST)

1: MVESKTKFEE IRKWVSDHKL RTVGCLWLSG ITGSIAYNWS QPAMKTSVKI IHARLHAQAL TLAALAGAAV VEYYDHKTEA TNRYPKFLPP ENLSHKD

Arabidopsis Description

F18C1.18 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.