Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- nucleus 1
- peroxisome 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020576.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY25023 | Canola | cytosol | 98.96 | 98.96 |
| CDX80621 | Canola | cytosol | 96.88 | 96.88 |
| CDX86141 | Canola | cytosol | 96.88 | 96.88 |
| AT5G27760.1 | Thale cress | cytosol | 92.71 | 92.71 |
| KRG92905 | Soybean | cytosol | 66.67 | 77.11 |
| VIT_05s0077g02320.t01 | Wine grape | cytosol | 70.83 | 70.1 |
| PGSC0003DMT400063585 | Potato | cytosol | 70.83 | 68.0 |
| Solyc01g099820.2.1 | Tomato | cytosol | 69.79 | 67.0 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 59.38 | 65.52 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 65.62 | 64.29 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 66.67 | 63.37 |
| KRH33884 | Soybean | cytosol | 44.79 | 62.32 |
| Zm00001d050935_P001 | Maize | cytosol | 60.42 | 58.59 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 59.38 | 57.58 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 59.38 | 57.58 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 57.29 | 55.56 |
| Os02t0592400-01 | Rice | cytosol | 61.46 | 55.14 |
| KRH73222 | Soybean | mitochondrion, plastid | 41.67 | 54.79 |
| EES05347 | Sorghum | cytosol | 61.46 | 54.13 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 32.29 | 52.54 |
| Zm00001d017060_P001 | Maize | cytosol | 60.42 | 52.25 |
| GSMUA_AchrUn_... | Banana | plastid | 40.62 | 43.82 |
| KRH31217 | Soybean | plastid | 38.54 | 37.0 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 45.83 | 36.67 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 33.33 | 36.36 |
| KRG97658 | Soybean | plastid | 36.46 | 35.0 |
| Os11t0112000-01 | Rice | mitochondrion | 30.21 | 32.22 |
| Os12t0111600-01 | Rice | nucleus | 34.38 | 31.43 |
| Zm00001d052333_P001 | Maize | cytosol | 33.33 | 29.36 |
| EES09115 | Sorghum | nucleus, plastid | 33.33 | 29.36 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 31.25 | 26.79 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 22.92 | 22.92 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 21.88 | 21.88 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 21.88 | 21.88 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 20.83 | 20.83 |
Protein Annotations
| EnsemblPlants:CDY05562 | EnsemblPlantsGene:GSBRNA2T00120507001 | GO:A0A078EX58 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 |
| PANTHER:PTHR28018:SF1 | PFAM:PF04588 | PFscan:PS51503 | ProteinID:CDY05562 | ProteinID:CDY05562.1 | SEG:seg |
| UniParc:UPI0002546AAD | MapMan:35.2 | : | : | : | : |
Description
BnaA02g31290D
Coordinates
chrLK031962:-:900762..902294
Molecular Weight (calculated)
10715.9 Da
IEP (calculated)
10.011
GRAVY (calculated)
-0.278
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MAESKTKFAE IREWIVDHKL RTVGCLWLSG ISGSIAYNWS KPGMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKTGA TDRYPKFLKP DNLNKD
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.