Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86141 | Canola | cytosol | 98.96 | 98.96 |
| CDY25023 | Canola | cytosol | 97.92 | 97.92 |
| CDY05562 | Canola | cytosol | 96.88 | 96.88 |
| AT5G27760.1 | Thale cress | cytosol | 92.71 | 92.71 |
| KRG92905 | Soybean | cytosol | 67.71 | 78.31 |
| VIT_05s0077g02320.t01 | Wine grape | cytosol | 71.88 | 71.13 |
| PGSC0003DMT400063585 | Potato | cytosol | 68.75 | 66.0 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 59.38 | 65.52 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 68.75 | 65.35 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 66.67 | 65.31 |
| Solyc01g099820.2.1 | Tomato | cytosol | 67.71 | 65.0 |
| KRH33884 | Soybean | cytosol | 45.83 | 63.77 |
| Zm00001d050935_P001 | Maize | cytosol | 61.46 | 59.6 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 58.33 | 56.57 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 58.33 | 56.57 |
| KRH73222 | Soybean | mitochondrion, plastid | 42.71 | 56.16 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 56.25 | 54.55 |
| Os02t0592400-01 | Rice | cytosol | 60.42 | 54.21 |
| EES05347 | Sorghum | cytosol | 60.42 | 53.21 |
| Zm00001d017060_P001 | Maize | cytosol | 61.46 | 53.15 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 32.29 | 52.54 |
| GSMUA_AchrUn_... | Banana | plastid | 41.67 | 44.94 |
| KRH31217 | Soybean | plastid | 40.62 | 39.0 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 35.42 | 38.64 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 45.83 | 36.67 |
| KRG97658 | Soybean | plastid | 37.5 | 36.0 |
| Os12t0111600-01 | Rice | nucleus | 36.46 | 33.33 |
| Os11t0112000-01 | Rice | mitochondrion | 31.25 | 33.33 |
| Zm00001d052333_P001 | Maize | cytosol | 35.42 | 31.19 |
| EES09115 | Sorghum | nucleus, plastid | 35.42 | 31.19 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 31.25 | 26.79 |
| HORVU5Hr1G047000.1 | Barley | cytosol, plastid | 23.96 | 23.96 |
| TraesCS5B01G147500.1 | Wheat | cytosol | 22.92 | 22.92 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 22.92 | 22.92 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 21.88 | 21.88 |
Protein Annotations
| EnsemblPlants:CDX80621 | EnsemblPlantsGene:GSBRNA2T00133757001 | GO:A0A078CTZ1 | InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 |
| PANTHER:PTHR28018:SF1 | PFAM:PF04588 | PFscan:PS51503 | ProteinID:CDX80621 | ProteinID:CDX80621.1 | SEG:seg |
| UniParc:UPI0004EC15FB | MapMan:35.2 | : | : | : | : |
Description
BnaC07g28230D
Coordinates
chrLK031821:-:1716299..1717622
Molecular Weight (calculated)
10701.0 Da
IEP (calculated)
10.011
GRAVY (calculated)
-0.258
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MAESKTKMAE IREWIVEHKL RTVGCLWLSG ISGSIAYNWS KPGMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKTGA TDRYPKFLKP DNLTKD
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.