Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | KRG91803 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | KRH34983 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | KRH34984 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92905 | Soybean | cytosol | 76.81 | 63.86 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 43.48 | 50.85 |
| Zm00001d050935_P001 | Maize | cytosol | 68.12 | 47.47 |
| VIT_14s0060g02300.t01 | Wine grape | plastid | 62.32 | 47.25 |
| GSMUA_Achr7P03750_001 | Banana | cytosol | 59.42 | 47.13 |
| Bra009944.1-P | Field mustard | cytosol | 65.22 | 46.88 |
| CDX86141 | Canola | cytosol | 65.22 | 46.88 |
| TraesCS2B01G460200.1 | Wheat | cytosol | 66.67 | 46.46 |
| AT3G05550.1 | Thale cress | cytosol | 65.22 | 46.39 |
| CDX80621 | Canola | cytosol | 63.77 | 45.83 |
| CDY25023 | Canola | cytosol | 63.77 | 45.83 |
| TraesCS2D01G438000.1 | Wheat | cytosol | 65.22 | 45.45 |
| GSMUA_Achr3P24030_001 | Banana | cytosol | 63.77 | 44.9 |
| AT5G27760.1 | Thale cress | cytosol | 62.32 | 44.79 |
| CDY05562 | Canola | cytosol | 62.32 | 44.79 |
| Bra020576.1-P | Field mustard | cytosol | 62.32 | 44.79 |
| TraesCS2A01G440800.1 | Wheat | cytosol, mitochondrion, plastid | 63.77 | 44.44 |
| Os02t0592400-01 | Rice | cytosol | 65.22 | 42.06 |
| GSMUA_Achr8P22530_001 | Banana | cytosol | 60.87 | 41.58 |
| Zm00001d017060_P001 | Maize | cytosol | 66.67 | 41.44 |
| EES05347 | Sorghum | cytosol | 65.22 | 41.28 |
| KRH73222 | Soybean | mitochondrion, plastid | 37.68 | 35.62 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 42.03 | 24.17 |
| KRG97658 | Soybean | plastid | 34.78 | 24.0 |
| KRH31217 | Soybean | plastid | 31.88 | 22.0 |
Protein Annotations
| EMBL:ACUP02006564 | EnsemblPlants:KRH33884 | EnsemblPlantsGene:GLYMA_10G151300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Hypoxia_induced_domain | InterPro:IPR007667 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF1 | PFAM:PF04588 | PFscan:PS51503 |
| ProteinID:KRH33884 | ProteinID:KRH33884.1 | UniParc:UPI00023CE7D8 | UniProt:I1LB99 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr10:-:38639217..38640081
Molecular Weight (calculated)
8005.9 Da
IEP (calculated)
11.003
GRAVY (calculated)
0.038
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MSEAKTQIES IRKWVVEHKL RTVGCLWLSG ISGSIAYNWS RPNMKTSVKI IHARFGSYNF LSFRILFLT
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARSYQWLK LLKNLVLISV
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.