Factsheet for Os12t0111600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27760.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G27760.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0112000-01	Rice	mitochondrion	80.95	94.44
EES09115	Sorghum	nucleus, plastid	73.33	70.64
Zm00001d052333_P001	Maize	cytosol	69.52	66.97
Zm00001d036839_P001	Maize	cytosol, nucleus, plastid	69.52	65.18
Solyc06g050870.2.1	Tomato	plastid	42.86	60.81
TraesCS5D01G143900.1	Wheat	cytosol	54.29	59.38
TraesCS5B01G147500.1	Wheat	cytosol	51.43	56.25
HORVU5Hr1G047000.1	Barley	cytosol, plastid	51.43	56.25
KRH73222	Soybean	mitochondrion, plastid	39.05	56.16
VIT_13s0067g02300.t01	Wine grape	plastid	41.9	55.7
TraesCS5A01G148900.1	Wheat	cytosol	50.48	55.21
GSMUA_AchrUn_...	Banana	plastid	41.9	49.44
GSMUA_Achr5P29560_001	Banana	plastid	40.0	47.73
PGSC0003DMT400071904	Potato	cytosol	36.19	47.5
KRH31217	Soybean	plastid	44.76	47.0
KRG97658	Soybean	plastid	43.81	46.0
CDX86141	Canola	cytosol	33.33	36.46
CDX80621	Canola	cytosol	33.33	36.46
Bra009944.1-P	Field mustard	cytosol	33.33	36.46
CDY25023	Canola	cytosol	32.38	35.42
CDY05562	Canola	cytosol	31.43	34.38
Bra020576.1-P	Field mustard	cytosol	31.43	34.38
AT5G27760.1	Thale cress	cytosol	31.43	34.38
Os07t0673900-01	Rice	cytosol	32.38	33.66
AT3G05550.1	Thale cress	cytosol	30.48	32.99
Os02t0592400-01	Rice	cytosol	33.33	32.71

Protein Annotations

MapMan:35.2	EntrezGene:4351298	ProteinID:ABA96218.1	EMBL:AK119685	EMBL:AK120264	ProteinID:BAF28988.1
ProteinID:BAT15564.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031305
GO:GO:0033617	GO:GO:0097249	InterPro:Hypoxia_induced_domain	InterPro:IPR007667	EMBL:KJ909977	EnsemblPlantsGene:Os12g0111600
EnsemblPlants:Os12t0111600-01	PFAM:PF04588	PFscan:PS51503	PANTHER:PTHR28018	PANTHER:PTHR28018:SF3	UniProt:Q2QYP0
UniParc:UPI0000681B8E	RefSeq:XP_015619401.1	SEG:seg	:	:	:

Description

Hypoxia-Induced Gene Domain 5, Hypoxia-Induced Gene Domain Protein 5Hypoxia induced protein conserved region family protein. (Os12t0111600-01)

Coordinates

chr12:-:607455..608215

Molecular Weight (calculated)

11616.5 Da

IEP (calculated)

7.889

GRAVY (calculated)

-0.474

Length

105 amino acids

Sequence
(BLAST)

001: MERLSSSVQS WVEEHKLASI GGLWATAVGA SVAYGRRKTP QMRLIHARLH AQALTLAVLG GAALAHHYYN PSSKTNNSSS LDYDFYSQLP PATTDDGQEN
101: ERWSW

Best Arabidopsis Sequence Match ( AT5G27760.1 )
(BLAST)

1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD

Arabidopsis Description

Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.