Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- mitochondrion 2
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27760.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G27760.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G147500.1 | Wheat | cytosol | 93.75 | 93.75 |
| TraesCS5A01G148900.1 | Wheat | cytosol | 92.71 | 92.71 |
| TraesCS5D01G143900.1 | Wheat | cytosol | 86.46 | 86.46 |
| Os12t0111600-01 | Rice | nucleus | 56.25 | 51.43 |
| Os11t0112000-01 | Rice | mitochondrion | 46.88 | 50.0 |
| Zm00001d052333_P001 | Maize | cytosol | 56.25 | 49.54 |
| Zm00001d036839_P001 | Maize | cytosol, nucleus, plastid | 53.12 | 45.54 |
| EES09115 | Sorghum | nucleus, plastid | 51.04 | 44.95 |
| KRH73222 | Soybean | mitochondrion, plastid | 28.12 | 36.99 |
| VIT_13s0067g02300.t01 | Wine grape | plastid | 28.12 | 34.18 |
| Solyc06g050870.2.1 | Tomato | plastid | 26.04 | 33.78 |
| KRH31217 | Soybean | plastid | 33.33 | 32.0 |
| GSMUA_Achr5P29560_001 | Banana | plastid | 27.08 | 29.55 |
| GSMUA_AchrUn_... | Banana | plastid | 27.08 | 29.21 |
| KRG97658 | Soybean | plastid | 29.17 | 28.0 |
| AT3G05550.1 | Thale cress | cytosol | 25.0 | 24.74 |
| CDX86141 | Canola | cytosol | 23.96 | 23.96 |
| CDX80621 | Canola | cytosol | 23.96 | 23.96 |
| Bra009944.1-P | Field mustard | cytosol | 23.96 | 23.96 |
| PGSC0003DMT400071904 | Potato | cytosol | 19.79 | 23.75 |
| AT5G27760.1 | Thale cress | cytosol | 22.92 | 22.92 |
| CDY25023 | Canola | cytosol | 22.92 | 22.92 |
| CDY05562 | Canola | cytosol | 22.92 | 22.92 |
| Bra020576.1-P | Field mustard | cytosol | 22.92 | 22.92 |
| HORVU2Hr1G102130.5 | Barley | cytosol | 20.83 | 16.67 |
| HORVU7Hr1G087030.1 | Barley | extracellular | 8.33 | 13.56 |
| HORVU2Hr1G019250.3 | Barley | cytosol | 16.67 | 10.74 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G047000.1 | EnsemblPlantsGene:HORVU5Hr1G047000 | PANTHER:PTHR28018 | PANTHER:PTHR28018:SF3 | PFscan:PS51257 | SEG:seg |
| UniParc:UPI000294923D | UniProt:M0YGX0 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:364905812..364906931
Molecular Weight (calculated)
10492.3 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.397
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKMSSSVQS WVDQHKLATV GAMWTAAVGA SVACGRRRGK AAGFTVAAAL GGAALARHYY TVKRREEEAR CFELDFYSQL PAATGDDGQE NERWSY
1: MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD
Arabidopsis Description
Hypoxia-responsive family protein [Source:UniProtKB/TrEMBL;Acc:Q8LG60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.