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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 4
  • plastid 2
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400091458 Potato nucleus 77.48 78.53
Solyc10g084170.1.1 Tomato cytosol 28.95 63.53
KRH01566 Soybean cytosol, plastid 28.42 34.98
KRH70544 Soybean cytosol 27.08 29.88
KRH01570 Soybean nucleus 29.49 29.18
VIT_01s0146g00150.t01 Wine grape plastid 33.78 26.75
Solyc04g014740.1.1 Tomato cytosol 6.7 25.25
GSMUA_Achr10P... Banana cytosol 20.38 14.7
Protein Annotations
Gene3D:1.20.58.120MapMan:35.2InterPro:BAG_dom_sfInterPro:BAG_domainncoils:CoilGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0006457GO:GO:0008150GO:GO:0009266
GO:GO:0009506GO:GO:0009605GO:GO:0009607GO:GO:0009628GO:GO:0009987GO:GO:0043207
GO:GO:0051087InterPro:IPR000048InterPro:IPR003103InterPro:IPR036533InterPro:IQ_motif_EF-hand-BSUniProt:K4C8W3
PFAM:PF00612PFAM:PF02179PFscan:PS50096PFscan:PS51035PANTHER:PTHR33322PANTHER:PTHR33322:SF6
SMART:SM00015SMART:SM00264SUPFAM:SSF63491EnsemblPlantsGene:Solyc06g072430.1EnsemblPlants:Solyc06g072430.1.1UniParc:UPI000276579A
SEG:seg:::::
Description
No Description!
Coordinates
chr6:+:44683424..44684545
Molecular Weight (calculated)
42506.5 Da
IEP (calculated)
5.615
GRAVY (calculated)
-0.816
Length
373 amino acids
Sequence
(BLAST)
001: MEYPLYGSYW PQSARPGYSS NMRGIPVQSI HQKPAGIKQA SKVVQIPVHF VSSDPERSVL ASATKKPEPD RSGSALKIQK VFRGFLVRKS VKKIKLIRKE
101: VEDVERKLLC RETAELICRD ERERLRVNET LMSLLFKLDS IRGVDSGVRE CRKAVIRKAI YLQEKVDCIV AAANQIAAEE ENQSDELSEP VNQTGDIPNS
201: TGKQDEDGKL TNQNELCHLS EQSVDVETQA ASNDEKTPIE GEHDVAPLNE KRGGLQEVKQ ETDCPMLECV EESVERGEVG DLIEVVEDVN ENENENETRS
301: HKFEGGEESR RNRELLEKMV EKNENMMRMM TELCHKNELQ TRMLNSLAQR VDQLEKTFLC DRLKTKKKKR HTA
Best Arabidopsis Sequence Match ( AT1G12060.1 )
(BLAST)
001: MKRSRKFSSS TTTTTVIHTF YNDHTTPPAT KEIPIETPLP ATKANVKTNA TAAAARIQSG YRSYRIRNLY KKISSINREA NRVQSIIQRQ ETVDAIRSDE
101: KERLRMNETL MALLLKLDSV PGLDPTIREA RRKVSRKIVG MQEILDSISE TKDEIQWWNY NDLGGVDSGQ GGGAWPLYWE EAVEEEMCRE RGGEEMERFC
201: AQYLGFRCFQ RFLRE
Arabidopsis Description
BAG5BAG5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFD4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.