Factsheet for Solyc06g076160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078178	Potato	endoplasmic reticulum, golgi	93.85	94.04
KRH57161	Soybean	endoplasmic reticulum	55.36	55.91
Solyc09g014900.2.1	Tomato	endoplasmic reticulum	43.65	44.44
Solyc09g092600.2.1	Tomato	endoplasmic reticulum	43.45	44.24
Solyc09g092640.2.1	Tomato	endoplasmic reticulum, extracellular	42.86	43.99
Solyc09g092590.1.1	Tomato	endoplasmic reticulum	42.86	43.46
Solyc11g006590.1.1	Tomato	endoplasmic reticulum, extracellular	42.86	43.46
Solyc09g092670.2.1	Tomato	endoplasmic reticulum, golgi	42.46	43.15
TraesCS2D01G337800.1	Wheat	endoplasmic reticulum	43.65	43.14
Os04t0480700-01	Rice	endoplasmic reticulum	43.65	43.05
Solyc09g092620.2.1	Tomato	extracellular, golgi, vacuole	42.06	42.74
Solyc09g092560.2.1	Tomato	extracellular, golgi	38.29	42.7
Solyc01g010490.2.1	Tomato	endoplasmic reticulum, extracellular	42.66	42.66
TraesCS2B01G357200.1	Wheat	endoplasmic reticulum	43.06	42.47
KXG26566	Sorghum	endoplasmic reticulum, plasma membrane	44.05	42.05
Solyc09g092580.2.1	Tomato	endoplasmic reticulum, golgi	41.47	41.63
Os04t0480600-01	Rice	cytosol	20.83	41.5
TraesCS2A01G325100.1	Wheat	mitochondrion, plastid	44.05	41.5
EES12375	Sorghum	endoplasmic reticulum	41.47	40.74
Os04t0480650-00	Rice	endoplasmic reticulum, extracellular	16.87	40.28
EES12376	Sorghum	endoplasmic reticulum	40.28	39.8
Zm00001d003283_P001	Maize	endoplasmic reticulum	41.27	38.45
OQU81806	Sorghum	endoplasmic reticulum, golgi	33.73	38.37
HORVU2Hr1G083020.3	Barley	endoplasmic reticulum	29.37	28.74

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016491	GO:GO:0016705
GO:GO:0016709	GO:GO:0019748	GO:GO:0020037	GO:GO:0044550	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036396	UniProt:K4C9X6	PFAM:PF00067	PRINTS:PR00385	PRINTS:PR00463	ScanProsite:PS00086
PANTHER:PTHR24298	PANTHER:PTHR24298:SF92	SUPFAM:SSF48264	EnsemblPlantsGene:Solyc06g076160.2	EnsemblPlants:Solyc06g076160.2.1	TMHMM:TMhelix
UniParc:UPI0002766F2F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:47289151..47291972

Molecular Weight (calculated)

57556.9 Da

IEP (calculated)

7.795

GRAVY (calculated)

-0.187

Length

504 amino acids

Sequence
(BLAST)

001: MSFIFLLKML ACLFLFLFIL FSLTTKKNKA KKLLPSPRKL PIVGNLHQLG KLPHRSLQKL SHEYGDFIFL QLGSIPTLLV SSADVAKEIF RVHDVAFAGR
101: PPLYAAKRLS YNCCNVSFAP YGNYWREARK ILALELLSAK RVESFSSIRD EEVSRLIQEI GNSLNSSINI SALALTLSNN VVCRVAFGKG SDDESGYDNG
201: GKKFHEILYD TQELLGEFNI ADYFPKMAWI NKFNGLDERL EKNFRELDKY YDKVIEDHVD SRNWIKEKDD EDLVDVLLRI QKDPNQDIPL QDSHIKGLLA
301: DIFVAGTDTS ATTIEWTMAE LILNPKVMKK VQQEVRQVAK GKTKVHETDL YKLEYMKLVI KEALRLHPPA PLLIPRVTTS TCKIMDYEIK ENTRVLINAT
401: AIGTDPKYWE NPLTFIPERF MNKDIDYKGQ SCEFLPFGAG RRGCPGINFS VPLVELAIAN LLFHYDWTLP HGMKPKDLDM EEALGLTMHK KIPLCLSASY
501: YYDL

Best Arabidopsis Sequence Match ( AT3G26300.1 )
(BLAST)

001: MTNIWLLSLI FVICILVAVF NHKNRRNYQR TPPSPPGCPI IGNLHQLGEL PHQSLWKLSK KYGPVMLLKL GRVPTVIVSS SETAKQALKI HDLHCCSRPG
101: FAGARELSYN YLDIAFSPYD DYWKEVRKLA VQELFSSKQV HSIQPIKDEE VKKLIDSISE SAAQKTPINL NKTLLALTVS VVCRTAFSVN FEGTVLNSER
201: FNNIVREALE MLGSFSASDF IPYVGRIIDL LTGLQGRRER SMRDLDAFYE QMFDLHKQKK EEGSEDFVDL LLRLEKEEAV LGNDKLTRNH IKAILMDVLL
301: AGMDTSAITM TWAMAELAKN PRVMKKVQSE IRSQIKNKER ISFDDTDKLE YLKMVIKETW RLHPTTPLLI PREAMSEFEI NGYTIPVKTR LHVNVWAIGR
401: DPDTWKDPEV FLPERFTDNN IDAKGQHFEL LPFGGGRRMC PAVYMGTTMV EFGLANLLYH FDWKLPEGMK VDDIDMEEAP GLTVNKKNEL ILVPTKFLDP

Arabidopsis Description

CYP71B34Cytochrome P450 71B34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIP6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.