Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0105g00330.t01 | Wine grape | cytosol | 63.45 | 23.2 |
| GSMUA_Achr6P15580_001 | Banana | cytosol | 54.0 | 21.88 |
| KRH65727 | Soybean | cytosol | 59.96 | 21.52 |
| KRH75969 | Soybean | cytosol | 59.55 | 21.32 |
| HORVU2Hr1G013790.2 | Barley | cytosol | 51.75 | 21.07 |
| KXG37042 | Sorghum | cytosol | 52.77 | 20.68 |
| Os07t0693900-01 | Rice | cytosol, plastid | 52.57 | 20.56 |
| TraesCS2D01G082200.3 | Wheat | cytosol, plastid | 51.75 | 20.02 |
| TraesCS2A01G084200.1 | Wheat | cytosol, plastid | 51.33 | 19.86 |
| TraesCS2B01G098800.3 | Wheat | cytosol, plastid | 51.13 | 19.71 |
| Solyc04g076910.2.1 | Tomato | nucleus | 46.0 | 19.48 |
| Zm00001d022586_P001 | Maize | cytosol | 50.31 | 19.05 |
| AT5G01400.1 | Thale cress | nucleus | 55.03 | 18.27 |
| CDY04840 | Canola | plastid | 53.39 | 17.87 |
| Bra028900.1-P | Field mustard | plastid | 54.0 | 17.36 |
| KRG88461 | Soybean | cytosol | 1.85 | 4.46 |
| Solyc09g005330.2.1 | Tomato | nucleus | 2.26 | 1.23 |
| Solyc04g076900.1.1 | Tomato | nucleus | 0.41 | 0.81 |
Protein Annotations
| EnsemblPlants:Solyc09g005340.2.1 | EnsemblPlantsGene:Solyc09g005340.2 | InterPro:Symplekin_C | PANTHER:PTHR15245 | PANTHER:PTHR15245:SF35 | PFAM:PF12295 |
| UniParc:UPI000276B10D | UniProt:K4CQ24 | MapMan:16.2.1.2.9 | : | : | : |
Description
No Description!
Coordinates
chr9:+:262449..269376
Molecular Weight (calculated)
53718.1 Da
IEP (calculated)
6.060
GRAVY (calculated)
0.053
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVISLFHF WCKELLVDDA ESILDFVSAV HHLEEVRMKA IRLVANKLYP LTSISQQIEL FANEMLMSVS TVDHKADSNG DESDPILQKD SASEKPSEEV
101: PSFSASSNPL QSSTSGSKSP FSIAEGQRRI SLYFALCTKK HSLFGQIFVV YSGASEAVQQ AIHQQIHMLV RTIGSSSELL DIISDPHNGS EKLLIQVLQT
201: LTEGIVPSLQ LITTIRKLYE TKVKDVQLLI MILPFLSKDE VLLLFPHVVN APLDKFQGAL LRTLQGSSHS GPVLTPTEAL IAIHRIDPER EGIPLKRVTD
301: ACNACFEQRE IFTQQVLAKV LNQLVEQIPL PLLFMRTVLQ AIGAFPSLVD FIMEILSRLV SKQIWKYPKQ WVGFVKCALL TRPQSFGVLL QLPPAQLENA
401: LGRTPALRAP LVAHASQAHI KSSLPRSVLM VLGIESDAQV SSQAPPNQSQ TGDIDNSDKE EGTEKSKDSS VLGASLVDCW RTVCIAS
101: PSFSASSNPL QSSTSGSKSP FSIAEGQRRI SLYFALCTKK HSLFGQIFVV YSGASEAVQQ AIHQQIHMLV RTIGSSSELL DIISDPHNGS EKLLIQVLQT
201: LTEGIVPSLQ LITTIRKLYE TKVKDVQLLI MILPFLSKDE VLLLFPHVVN APLDKFQGAL LRTLQGSSHS GPVLTPTEAL IAIHRIDPER EGIPLKRVTD
301: ACNACFEQRE IFTQQVLAKV LNQLVEQIPL PLLFMRTVLQ AIGAFPSLVD FIMEILSRLV SKQIWKYPKQ WVGFVKCALL TRPQSFGVLL QLPPAQLENA
401: LGRTPALRAP LVAHASQAHI KSSLPRSVLM VLGIESDAQV SSQAPPNQSQ TGDIDNSDKE EGTEKSKDSS VLGASLVDCW RTVCIAS
0001: MKFVEALILL YTPHEGIEAD FNISILRGGH PVLKIGDLSI EASQKLGLLL DQLRHPAAKS LNSSTIIVLI NSLSSVAKKR PAYCGRILPV LLSLDPLSFL
0101: KGVYAAATNL ALKTVFLSCL KCTHPAAAPW KDRLTSALKE IEGGGQAAKA KDLFYKTNGS IQDKDSVEDT KVSVEENPLC ASSDVAESNL SRKRSGSEYN
0201: IDLNGDASDG KRARITPSVS EESTDGLNGN DGVSLPRVAS TSTGPSDSRG VSDSGPAQQL VGLFGTLVSQ GEKAIGSLEI LISSISADLL TDVVMANMHN
0301: IPPNCSSYAD GTDELVMNMC IVGSDAQIKY PPSFVAGVLS LSTAFPPIAA LINPHNEDEE VYSVHVDQQM FPAEDARTPP GLLATCDTSF PENEESNTVS
0401: PQNVHYIGNR ESGIPGLESS AQHDGSGALV TNVLSSTNVE AASKNQNASF SGKLLVDVIP SMSVDKLEEF SPKAVGTVAS ASQFVLPKIS APVVDLSDEE
0501: KDSLQKLVFL RIVEAYKQIS MSGGSQLRFS LLAHLGVEFP SELDPWKILQ EHVLSDYLNH EGHELTVRVL YRLYGEAEAE QDFFSSTTAA SAYESFLLTV
0601: AEALRDSFPP SDKSLSKLLG DSPHLPKSVL MLLESFCCPG SGEVEKDLQH GDRVTQGLSA VWSLILMRPG IRNDCLNIAL QSAVHHLEEI RMKAIRLVAN
0701: KLYSLSFITE QIEEFAKDRL FSVVSDDCDK MDLDLKSPPN KPQHSISGMS METPSEATSS STSVTEAQRC LSLYFALCTK KHSLFVHVFS IYKNASDPVK
0801: QAIHLQIPIL VRTMGSSSEL LKIIADPPSG SDNLLIQVLQ TLTEGPTPSS ELILTIRKLF DTRIKDVEIL FPILPFLPRD DVLRIFPHMV NLPMEKFQVA
0901: LSRVLQGSSQ SGPVLSPSEA LIAIHSIDPA RDGIPLKQVT DACNTCFAQR QTFTQQVLAG VLNQLVQQIP LPMLFMRTVL QAIGAFPALS DFILEILSRL
1001: VSKQIWKYPK LWVGFLKCTQ TTQPQSYKVL LQLPPLQLGN ALTKIPALRA PLTAHASQPE IQSSLPRSTL AVLGLVPDSQ GTQTSQVQAN ETQTSQEQQQ
1101: QQASEPQQTS QSQQVSVPLS HSQVDHQEPS QVVASQSQSS PIGTVQSAMS QSQNSPIDTG RSEMSQSQNS PIDTGRSEMS QSQNSPIDTG RSEMSQSQNS
1201: PIDTGRSEMS ESQSSPIGQS QSSPIGTGQS DMSQTPQVSD SSAPEPTSHT RTSDPQASSQ TLRDDDEKID DTATSENEVT EIEKSKESSE EEEEEEEEEE
0101: KGVYAAATNL ALKTVFLSCL KCTHPAAAPW KDRLTSALKE IEGGGQAAKA KDLFYKTNGS IQDKDSVEDT KVSVEENPLC ASSDVAESNL SRKRSGSEYN
0201: IDLNGDASDG KRARITPSVS EESTDGLNGN DGVSLPRVAS TSTGPSDSRG VSDSGPAQQL VGLFGTLVSQ GEKAIGSLEI LISSISADLL TDVVMANMHN
0301: IPPNCSSYAD GTDELVMNMC IVGSDAQIKY PPSFVAGVLS LSTAFPPIAA LINPHNEDEE VYSVHVDQQM FPAEDARTPP GLLATCDTSF PENEESNTVS
0401: PQNVHYIGNR ESGIPGLESS AQHDGSGALV TNVLSSTNVE AASKNQNASF SGKLLVDVIP SMSVDKLEEF SPKAVGTVAS ASQFVLPKIS APVVDLSDEE
0501: KDSLQKLVFL RIVEAYKQIS MSGGSQLRFS LLAHLGVEFP SELDPWKILQ EHVLSDYLNH EGHELTVRVL YRLYGEAEAE QDFFSSTTAA SAYESFLLTV
0601: AEALRDSFPP SDKSLSKLLG DSPHLPKSVL MLLESFCCPG SGEVEKDLQH GDRVTQGLSA VWSLILMRPG IRNDCLNIAL QSAVHHLEEI RMKAIRLVAN
0701: KLYSLSFITE QIEEFAKDRL FSVVSDDCDK MDLDLKSPPN KPQHSISGMS METPSEATSS STSVTEAQRC LSLYFALCTK KHSLFVHVFS IYKNASDPVK
0801: QAIHLQIPIL VRTMGSSSEL LKIIADPPSG SDNLLIQVLQ TLTEGPTPSS ELILTIRKLF DTRIKDVEIL FPILPFLPRD DVLRIFPHMV NLPMEKFQVA
0901: LSRVLQGSSQ SGPVLSPSEA LIAIHSIDPA RDGIPLKQVT DACNTCFAQR QTFTQQVLAG VLNQLVQQIP LPMLFMRTVL QAIGAFPALS DFILEILSRL
1001: VSKQIWKYPK LWVGFLKCTQ TTQPQSYKVL LQLPPLQLGN ALTKIPALRA PLTAHASQPE IQSSLPRSTL AVLGLVPDSQ GTQTSQVQAN ETQTSQEQQQ
1101: QQASEPQQTS QSQQVSVPLS HSQVDHQEPS QVVASQSQSS PIGTVQSAMS QSQNSPIDTG RSEMSQSQNS PIDTGRSEMS QSQNSPIDTG RSEMSQSQNS
1201: PIDTGRSEMS ESQSSPIGQS QSSPIGTGQS DMSQTPQVSD SSAPEPTSHT RTSDPQASSQ TLRDDDEKID DTATSENEVT EIEKSKESSE EEEEEEEEEE
Arabidopsis Description
ESP4HEAT repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M033]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.