Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G116600.1 | Wheat | plastid | 92.59 | 93.75 |
| KXG21447 | Sorghum | plastid | 80.25 | 78.31 |
| Os05t0176600-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 71.6 | 74.36 |
| HORVU1Hr1G026140.3 | Barley | plastid | 77.78 | 71.59 |
| Solyc07g005430.2.1 | Tomato | cytosol, golgi, plastid | 54.32 | 61.11 |
| CDY07371 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 55.56 | 59.21 |
| GSMUA_Achr6P04770_001 | Banana | plastid | 55.56 | 58.44 |
| CDY04243 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 53.09 | 57.33 |
| VIT_11s0016g04770.t01 | Wine grape | cytosol, golgi, plastid | 54.32 | 57.14 |
| AT1G68680.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane, plastid | 50.62 | 54.67 |
| KRH56645 | Soybean | cytosol | 50.62 | 51.25 |
| Bra004023.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 53.09 | 47.25 |
| PGSC0003DMT400029039 | Potato | golgi, plasma membrane, plastid | 46.91 | 42.7 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G136600.1 | EnsemblPlantsGene:TraesCS1B01G136600 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005747 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | PANTHER:PTHR37713 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:174601894..174604413
Molecular Weight (calculated)
9126.2 Da
IEP (calculated)
9.991
GRAVY (calculated)
-0.048
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MASSSSSSHF EDPSARRPPP PQRKPPVLML LPLIYAPVLP LIRIGLRHNP VWRDRLFYGV LAGAFVHGTY LISELYDVES K
1: MASSSDPSKP VMERKKKGAP IKFLVPLIYA PALPLIRLSL RHKPVLRDRL FGLVLVGAFA HGFYLVTDIY DAESK
Arabidopsis Description
At1g68680 [Source:UniProtKB/TrEMBL;Acc:Q8L9R6]
SUBAcon: [endoplasmic reticulum,plastid,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.