Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G324700.2 | Wheat | nucleus | 99.07 | 99.07 |
| TraesCS3A01G290100.1 | Wheat | cytosol | 95.35 | 99.03 |
| HORVU3Hr1G071800.7 | Barley | cytosol, nucleus, plastid | 98.14 | 97.69 |
| KXG33372 | Sorghum | cytosol | 91.16 | 91.16 |
| Zm00001d043479_P001 | Maize | cytosol, plastid | 87.44 | 90.38 |
| Os01t0750500-01 | Rice | cytosol | 90.23 | 90.23 |
| TraesCS1D01G126700.1 | Wheat | cytosol | 74.42 | 74.42 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G289900.2 | EnsemblPlantsGene:TraesCS3D01G289900 | InterPro:DUF814 | ncoils:Coil | PANTHER:PTHR13049 | PANTHER:PTHR13049:SF3 |
| PFAM:PF05670 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:399856517..399858954
Molecular Weight (calculated)
24817.7 Da
IEP (calculated)
9.207
GRAVY (calculated)
-0.732
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFYFKARPD AGDYTIYMGA DKNENEELIK YGLPEDVWFH VDKVSSAHVY LRLKKGDSID TISEGLLEDC AQLVKAHSIQ GNKMNNVEVV YTPWSNLKKA
101: TSMDVGQVGF HNHRLVHVLT VEKRVNEILN RLNKTRVERR PDLKAEKDAS NAAEKAERKM QLKDKKRREE MERVVKERQA EIRSYKGLMV AEKMTSNRQI
201: ASAGKSIQEM EDEFV
101: TSMDVGQVGF HNHRLVHVLT VEKRVNEILN RLNKTRVERR PDLKAEKDAS NAAEKAERKM QLKDKKRREE MERVVKERQA EIRSYKGLMV AEKMTSNRQI
201: ASAGKSIQEM EDEFV
001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
Arabidopsis Description
Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q9LYE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.