Factsheet for Zm00001d043479_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33372	Sorghum	cytosol	96.63	93.49
Os01t0750500-01	Rice	cytosol	90.38	87.44
TraesCS3D01G289900.2	Wheat	nucleus	90.38	87.44
TraesCS3A01G290100.1	Wheat	cytosol	87.02	87.44
TraesCS3B01G324700.2	Wheat	nucleus	89.9	86.98
HORVU3Hr1G071800.7	Barley	cytosol, nucleus, plastid	89.9	86.57
Zm00001d010425_P005	Maize	cytosol	74.04	71.63
Zm00001d038564_P001	Maize	cytosol, mitochondrion, nucleus, plastid	35.1	58.87
Zm00001d033426_P001	Maize	plastid	40.87	30.25
Zm00001d002380_P001	Maize	plastid	40.87	30.04
Zm00001d047140_P001	Maize	plastid	40.87	30.04
Zm00001d031558_P001	Maize	plastid	40.87	29.31

Protein Annotations

EnsemblPlants:Zm00001d043479_P001	EnsemblPlants:Zm00001d043479_T001	EnsemblPlantsGene:Zm00001d043479	EntrezGene:100217062	InterPro:DUF814	ncoils:Coil
PANTHER:PTHR13049	PANTHER:PTHR13049:SF3	PFAM:PF05670	ProteinID:ONM38204.1	SEG:seg	UniParc:UPI0004DEC192
UniProt:A0A1D6NCH3	MapMan:35.2	:	:	:	:

Description

Coiled-coil domain-containing protein 25

Coordinates

chr3:-:201465990..201469783

Molecular Weight (calculated)

24072.0 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.719

Length

208 amino acids

Sequence
(BLAST)

001: MVLYFKARPD AGDYTIYMGA DKNENEELIK YGLPEDVWFH VDKVSSAHVY LRLKKGETIH TISEALLEDC AQLVKAHSIQ GNKMNNVEVI YTPWANLKKS
101: PSMDVGQVHV LIVEKRVNEI INRLNKTRVE RRAPDLKAEK EASNAAEKAE RKMQLKEKKR KEEMERLEKE KWAEIRSYKG LMVAEKMTSN RQIASAGKSM
201: QEMEDEFV

Best Arabidopsis Sequence Match ( AT5G11500.1 )
(BLAST)

001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM

Arabidopsis Description

Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q9LYE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.