Factsheet for Zm00001d010425_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11500.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19245	Sorghum	cytosol	98.6	98.6
TraesCS1B01G147600.1	Wheat	cytosol	92.56	92.56
TraesCS1A01G127000.1	Wheat	cytosol	92.09	92.09
TraesCS1D01G126700.1	Wheat	cytosol	91.63	91.63
HORVU1Hr1G030030.2	Barley	cytosol	90.7	90.7
KRH62018	Soybean	cytosol	87.91	87.91
GSMUA_Achr6P14040_001	Banana	nucleus	87.44	87.44
VIT_04s0008g03810.t01	Wine grape	cytosol	86.98	86.98
KRH52676	Soybean	cytosol	86.51	86.51
Solyc08g068300.2.1	Tomato	cytosol	83.26	83.26
PGSC0003DMT400028092	Potato	cytosol, mitochondrion	83.26	83.26
Bra008957.1-P	Field mustard	cytosol	82.33	82.33
Zm00001d038564_P001	Maize	cytosol, mitochondrion, nucleus, plastid	46.98	81.45
Bra006101.1-P	Field mustard	cytosol	81.4	81.4
CDX78426	Canola	cytosol	81.4	81.4
AT5G11500.1	Thale cress	cytosol	81.4	81.4
CDX97118	Canola	cytosol	80.93	80.93
CDX91213	Canola	cytosol	80.93	80.93
CDX70397	Canola	cytosol	80.93	80.93
CDX69751	Canola	cytosol	80.93	80.93
Zm00001d043479_P001	Maize	cytosol, plastid	71.63	74.04
Zm00001d033426_P001	Maize	plastid	52.56	40.21
Zm00001d002380_P001	Maize	plastid	52.56	39.93
Zm00001d047140_P001	Maize	plastid	52.56	39.93
Zm00001d031558_P001	Maize	plastid	53.02	39.31

Protein Annotations

EMBL:BT042986	EMBL:EU963481	EMBL:EU965757	EnsemblPlants:Zm00001d010425_P005	EnsemblPlants:Zm00001d010425_T005	EnsemblPlantsGene:Zm00001d010425
EntrezGene:100283739	InterPro:DUF814	ncoils:Coil	PANTHER:PTHR13049	PANTHER:PTHR13049:SF3	PFAM:PF05670
ProteinID:AQK94024.1	SEG:seg	UniParc:UPI00017B775F	UniProt:B4G0U8	MapMan:35.2	:

Description

Coiled-coil domain-containing protein 25 [Source:UniProtKB/TrEMBL;Acc:B4G0U8]

Coordinates

chr8:-:114503459..114510881

Molecular Weight (calculated)

25063.1 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.812

Length

215 amino acids

Sequence
(BLAST)

001: MVFYFKARPE AGDYTIFMGL DKYENEDLIK YGFPEDIWFH VDKMSSAHVY VRLNKGQSMD DMSEGLLEDC AQLVKANSIQ GNKVNNIDVV YTPWYNLKKT
101: PSMDVGQVGF HNPKLVRTIK VEKRINEIVN RLNKTKVERK PDLKAEREAI SAAEKAERKA QLRDKKRREE MERLEKEKQA DIRSYKGLMV QEKMTSNKQI
201: ASGSKTLQEL EEDFM

Best Arabidopsis Sequence Match ( AT5G11500.1 )
(BLAST)

001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM

Arabidopsis Description

Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q9LYE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.