Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G11500.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT5G11500.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006101.1-P | Field mustard | cytosol | 99.53 | 99.53 |
| CDX78426 | Canola | cytosol | 99.53 | 99.53 |
| CDX97118 | Canola | cytosol | 98.14 | 98.14 |
| CDX69751 | Canola | cytosol | 97.67 | 97.67 |
| AT5G11500.1 | Thale cress | cytosol | 96.74 | 96.74 |
| CDX91213 | Canola | cytosol | 95.81 | 95.81 |
| VIT_04s0008g03810.t01 | Wine grape | cytosol | 86.98 | 86.98 |
| Solyc08g068300.2.1 | Tomato | cytosol | 86.98 | 86.98 |
| PGSC0003DMT400028092 | Potato | cytosol, mitochondrion | 86.98 | 86.98 |
| KRH62018 | Soybean | cytosol | 86.05 | 86.05 |
| KRH52676 | Soybean | cytosol | 85.58 | 85.58 |
| GSMUA_Achr6P14040_001 | Banana | nucleus | 85.58 | 85.58 |
| HORVU1Hr1G030030.2 | Barley | cytosol | 83.72 | 83.72 |
| TraesCS1A01G127000.1 | Wheat | cytosol | 82.79 | 82.79 |
| TraesCS1B01G147600.1 | Wheat | cytosol | 82.79 | 82.79 |
| TraesCS1D01G126700.1 | Wheat | cytosol | 82.33 | 82.33 |
| EES19245 | Sorghum | cytosol | 80.93 | 80.93 |
| Zm00001d010425_P005 | Maize | cytosol | 80.93 | 80.93 |
Protein Annotations
| EnsemblPlants:CDX70397 | EnsemblPlantsGene:GSBRNA2T00140202001 | InterPro:DUF814 | ncoils:Coil | PANTHER:PTHR13049 | PANTHER:PTHR13049:SF3 |
| PFAM:PF05670 | ProteinID:CDX70397 | ProteinID:CDX70397.1 | SEG:seg | UniParc:UPI0004EC561D | MapMan:35.2 |
Description
BnaC03g04810D
Coordinates
chrLK031791:+:239954..242212
Molecular Weight (calculated)
25067.9 Da
IEP (calculated)
8.416
GRAVY (calculated)
-0.808
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHKGQGFD DINEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNDIIN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IERLEKERQA EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
101: ASMDVGQVGF HNSKMVRTIR VEKRVNDIIN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IERLEKERQA EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
Arabidopsis Description
Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q9LYE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.