Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78426 | Canola | cytosol | 97.21 | 97.21 |
| Bra006101.1-P | Field mustard | cytosol | 97.21 | 97.21 |
| CDX70397 | Canola | cytosol | 96.74 | 96.74 |
| CDX91213 | Canola | cytosol | 96.28 | 96.28 |
| Bra008957.1-P | Field mustard | cytosol | 95.81 | 95.81 |
| CDX97118 | Canola | cytosol | 95.81 | 95.81 |
| CDX69751 | Canola | cytosol | 95.35 | 95.35 |
| PGSC0003DMT400028092 | Potato | cytosol, mitochondrion | 87.44 | 87.44 |
| Solyc08g068300.2.1 | Tomato | cytosol | 87.44 | 87.44 |
| VIT_04s0008g03810.t01 | Wine grape | cytosol | 86.98 | 86.98 |
| KRH62018 | Soybean | cytosol | 86.98 | 86.98 |
| KRH52676 | Soybean | cytosol | 86.05 | 86.05 |
| GSMUA_Achr6P14040_001 | Banana | nucleus | 85.58 | 85.58 |
| TraesCS1D01G126700.1 | Wheat | cytosol | 83.26 | 83.26 |
| HORVU1Hr1G030030.2 | Barley | cytosol | 82.79 | 82.79 |
| TraesCS1B01G147600.1 | Wheat | cytosol | 82.79 | 82.79 |
| TraesCS1A01G127000.1 | Wheat | cytosol | 82.79 | 82.79 |
| Zm00001d010425_P005 | Maize | cytosol | 81.4 | 81.4 |
| EES19245 | Sorghum | cytosol | 80.93 | 80.93 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831022 | UniProt:A0A178UQS1 | ProteinID:AED91687.1 | ArrayExpress:AT5G11500 | EnsemblPlantsGene:AT5G11500 |
| RefSeq:AT5G11500 | TAIR:AT5G11500 | RefSeq:AT5G11500-TAIR-G | EnsemblPlants:AT5G11500.1 | TAIR:AT5G11500.1 | EMBL:AY142650 |
| ProteinID:CAB87710.1 | ncoils:Coil | InterPro:DUF814 | GO:GO:0008150 | RefSeq:NP_196711.1 | ProteinID:OAO96259.1 |
| PFAM:PF05670 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR13049 |
| PANTHER:PTHR13049:SF3 | UniProt:Q9LYE1 | UniParc:UPI00000AC50B | SEG:seg | : | : |
Description
Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q9LYE1]
Coordinates
chr5:+:3676565..3679738
Molecular Weight (calculated)
25100.8 Da
IEP (calculated)
8.419
GRAVY (calculated)
-0.813
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.