Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G11500.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g03810.t01 | Wine grape | cytosol | 91.63 | 91.63 |
| KRH62018 | Soybean | cytosol | 88.84 | 88.84 |
| EES19245 | Sorghum | cytosol | 87.91 | 87.91 |
| Zm00001d010425_P005 | Maize | cytosol | 87.44 | 87.44 |
| KRH52676 | Soybean | cytosol | 87.44 | 87.44 |
| Solyc08g068300.2.1 | Tomato | cytosol | 86.98 | 86.98 |
| PGSC0003DMT400028092 | Potato | cytosol, mitochondrion | 86.98 | 86.98 |
| HORVU1Hr1G030030.2 | Barley | cytosol | 86.51 | 86.51 |
| TraesCS1B01G147600.1 | Wheat | cytosol | 86.51 | 86.51 |
| CDX78426 | Canola | cytosol | 86.05 | 86.05 |
| TraesCS1A01G127000.1 | Wheat | cytosol | 86.05 | 86.05 |
| TraesCS1D01G126700.1 | Wheat | cytosol | 86.05 | 86.05 |
| Bra006101.1-P | Field mustard | cytosol | 86.05 | 86.05 |
| AT5G11500.1 | Thale cress | cytosol | 85.58 | 85.58 |
| CDX70397 | Canola | cytosol | 85.58 | 85.58 |
| Bra008957.1-P | Field mustard | cytosol | 85.12 | 85.12 |
| CDX97118 | Canola | cytosol | 83.72 | 83.72 |
| CDX91213 | Canola | cytosol | 83.72 | 83.72 |
| CDX69751 | Canola | cytosol | 83.72 | 83.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P14040_001 | EnsemblPlants:GSMUA_Achr6T14040_001 | EnsemblPlantsGene:GSMUA_Achr6G14040_001 | InterPro:DUF814 | ncoils:Coil | PANTHER:PTHR13049 |
| PANTHER:PTHR13049:SF3 | PFAM:PF05670 | SEG:seg | UniParc:UPI00029669C6 | UniProt:M0T6V2 | MapMan:35.2 |
Description
Coiled-coil domain-containing protein 25 [Source:GMGC_GENE;Acc:GSMUA_Achr6G14040_001]
Coordinates
chr6:-:9287629..9291757
Molecular Weight (calculated)
25056.1 Da
IEP (calculated)
8.881
GRAVY (calculated)
-0.762
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFYFKALPE AGDYTIFMGL DKHENEELIK YGFPEDIWFH VDKMSSAHVY LRLNKGQTID DINEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWFNLKKT
101: PSMDVGQVGF HNPKMVRTVK VEKRINEIVN RLNKTKVERK PDLKAEREAV NAVERAERKA QLRDKKKREE LERLEKEKQS EIRSYKSLMV SEKMTSNKQI
201: ASANKSLQEL EDDFM
101: PSMDVGQVGF HNPKMVRTVK VEKRINEIVN RLNKTKVERK PDLKAEREAV NAVERAERKA QLRDKKKREE LERLEKEKQS EIRSYKSLMV SEKMTSNKQI
201: ASANKSLQEL EDDFM
001: MVFYFKARPD AGDYTIFMGL DKFENEELIK YGFPEDVWFH VDKMSSAHVY LRLHRGQSFD DISEGVLEDC AQLVKANSIQ GNKVNNVDVV YTPWSNLKKT
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
101: ASMDVGQVGF HNSKMVRTIR VEKRVNEIVN RLNKTKVERT PDLRAEREAV NAAERAERKQ HLREKKKREE IDRLEKERQS EMRSYKGLMV TDKMTSNKDI
201: ASSNKSLQEL EDDFM
Arabidopsis Description
Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q9LYE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.