Factsheet for TraesCS6B01G276700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G248000.1	Wheat	cytosol	100.0	100.0
TraesCS6D01G230100.1	Wheat	cytosol	100.0	100.0
TraesCS3B01G228500.1	Wheat	cytosol	96.95	96.95
TraesCS6B01G276800.1	Wheat	cytosol	96.95	96.95
HORVU6Hr1G063490.2	Barley	cytosol	100.0	89.34
TraesCS6B01G197300.1	Wheat	cytosol	88.83	88.38

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0006556	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00086	PFAM:PF00438
PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964
PANTHER:PTHR11964:SF16	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam
SUPFAM:SSF55973	TIGRFAMs:TIGR01034	EnsemblPlantsGene:TraesCS6B01G276700	EnsemblPlants:TraesCS6B01G276700.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:500894267..500895451

Molecular Weight (calculated)

42767.9 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.203

Length

394 amino acids

Sequence
(BLAST)

001: MAAETFLFTS ESVNEGHPDK LCDQVSDAVL DACLAQDADS KVACETVTKT NMVMVLGEIT TKATVDYEKI VRDTCRNIGF ISDDVGLDAD RCKVLVNIEQ
101: QSPDIAQGVH GHFTKRPEEV GAGDQGIMFG YATDETPELM PLSHVLATKL GARLTEVRKN GTCAWVRPDG KTQVTVEYLN EDGAMVPVRV HTVLISTQHD
201: ETVTNDEIAA DLKEHVIKPV IPAKYLDENT IFHLNPSGRF VIGGPHGDAG LTGRKIIIDT YGGWGAHGGG AFSGKDPTKV DRSGAYIARQ AAKSIIASGL
301: ARRCIVQISY AIGVPEPLSV FVDSYGTGKI PDREILKLVK ENFDFRPGMI SINLDLKKGG NRFIKTAAYG HFGRDDADFT WEVVKPLKFD KASA

Best Arabidopsis Sequence Match ( AT1G02500.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATVDYEKIVR DTCRAIGFVS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKCPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CAWLRPDGKT QVTVEYYNDK GAMVPIRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYETGLIPD KEILKIVKES FDFRPGMMTI NLDLKRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM1S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178WES1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.