Factsheet for TraesCSU01G093600.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G144400.1	Wheat	cytosol, vacuole	99.76	99.76
TraesCS7A01G144500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	100.0	81.17
TraesCS7D01G146000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	98.09	79.61
TraesCS7B01G047000.1	Wheat	extracellular, vacuole	97.61	79.22
TraesCS7B01G046900.1	Wheat	vacuole	97.85	78.96
HORVU7Hr1G029660.1	Barley	extracellular, mitochondrion, vacuole	94.98	74.62
HORVU7Hr1G029680.1	Barley	peroxisome, vacuole	95.22	72.89
HORVU0Hr1G023830.2	Barley	vacuole	94.98	71.4
EES15002	Sorghum	endoplasmic reticulum, extracellular	82.78	68.38
Os08t0425300-00	Rice	extracellular	77.27	61.06
KRH14764	Soybean	cytosol, nucleus, vacuole	58.37	60.1
Solyc07g049300.2.1	Tomato	extracellular, vacuole	64.59	53.68
PGSC0003DMT400001781	Potato	extracellular, vacuole	63.88	53.08
Bra021821.1-P	Field mustard	vacuole	62.92	51.67
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	63.88	51.25
CDY17123	Canola	vacuole	62.68	50.19
Bra005536.1-P	Field mustard	vacuole	62.68	50.19
AT2G32990.1	Thale cress	extracellular, vacuole	62.92	50.1
CDY19428	Canola	vacuole	62.44	50.0
CDY19174	Canola	vacuole	62.92	49.91
KRH73374	Soybean	vacuole	61.96	49.43
CDY23776	Canola	vacuole	61.96	49.24
GSMUA_Achr7P02160_001	Banana	vacuole	59.57	48.82
GSMUA_Achr8P22580_001	Banana	endoplasmic reticulum, golgi, mitochondrion, vacuole	59.33	48.63

Protein Annotations

EnsemblPlants:TraesCSU01G093600.1	EnsemblPlantsGene:TraesCSU01G093600	Gene3D:1.50.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	KEGG:00500+3.2.1.4	PANTHER:PTHR22298	PANTHER:PTHR22298:SF35
PFAM:PF00759	ScanProsite:PS00592	SEG:seg	SUPFAM:SSF48208	MapMan:35.1	:

Description

No Description!

Coordinates

chrUn:+:82676816..82678343

Molecular Weight (calculated)

46795.0 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.372

Length

418 amino acids

Sequence
(BLAST)

001: MAFTVTMLSW SAMEFADDIT AAGEWRHVLE AIKWGTDYFV KAHTEPYVLW AEVGDGDTDH YCWQRPEDMT TSRQAYKVDR DNPGSDLVGE TAAALAAASM
101: VFRRSNPHYA QVLLHHAEQL FEFGDKYRGK YDSSIGEAYS YYASVSGYGD EILWAALWLH RATGKASYLD YAVDMADEFG GTTWAITEFS WDVKYAGLQI
201: LATKVLLEGK HPEYKATLEK YKAKAEHYLC ACLNKNGDAG NVNRTAGGML FVRQWNNMQY VTNAAFLLTV YSRYLTSAGQ EPPVLQCPDG PAHADELRSL
301: ARAQTDYVLG ANPAGVSYLV GYGQRFPRRM HHRGASIVSH RGDGRFIGCM QGYDNWFLRR GANPNVVIGA IVGGPDHLDR FRDRRDNYMQ TEACTYNTAP
401: MVGIFAHLHG ETAITKKS

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.