Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G539900.1 | Wheat | cytosol | 96.9 | 51.65 |
| TraesCS7B01G461000.2 | Wheat | cytosol | 96.66 | 47.59 |
| TraesCSU01G189900.1 | Wheat | cytosol | 6.92 | 8.76 |
| TraesCSU01G200200.1 | Wheat | cytosol, vacuole | 1.19 | 2.86 |
| TraesCSU01G211600.1 | Wheat | cytosol | 1.67 | 2.62 |
| TraesCSU01G050800.1 | Wheat | cytosol, extracellular, nucleus | 0.48 | 0.61 |
| TraesCSU01G255000.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | Gene3D:2.60.40.10 | MapMan:20.7.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000535 | InterPro:IPR001680 | InterPro:IPR013783 | InterPro:IPR015943 | InterPro:IPR017986 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00400 | PFAM:PF00635 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50202 | PFscan:PS50294 | PANTHER:PTHR19876 | InterPro:PapD-like_sf | SMART:SM00320 |
| SUPFAM:SSF49354 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCSU01G192700 | EnsemblPlants:TraesCSU01G192700.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg | : |
Description
No Description!
Coordinates
chrUn:+:289818379..289822384
Molecular Weight (calculated)
47239.9 Da
IEP (calculated)
4.841
GRAVY (calculated)
-0.271
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLNEEINN ANEYTSGKIS SCLEEDDMLG IEPLKLHFPF ALNKQMSCEI QLTNETDSYI AFNVQNMSPK SYNTQPQKDI MPPRSKCNIE ITLQAQGNVP
101: IDMQRANEFV VWSTKVNDGI AFEDITKSMF IKETVNVVDE VNLDVVFDVS GPQEASDKIS EQTMPPLIQI IDDTAGKIYC IDAHQKEPFI IVGTSLGNVK
201: TWNYDTQKVA GLTKVSAEPV TDVKFIARKG WFVAVSSDCV VHVYHYEKEM RKVTSFRALG RADVWCTLAV HPTQPYVLSG CATEIKLWDL NCIQTFEEHS
301: AAIMALKFNP EDTNSFASAS HDTTIKVWSI DSPKSKYTLF GHRHVVNFLD FFTRDGQQYL ISGSWDATAK IWDMDKKECV HTLEHESAVF QVVSHPNLPV
401: LITGTKDGDV HAWSSNDFR
101: IDMQRANEFV VWSTKVNDGI AFEDITKSMF IKETVNVVDE VNLDVVFDVS GPQEASDKIS EQTMPPLIQI IDDTAGKIYC IDAHQKEPFI IVGTSLGNVK
201: TWNYDTQKVA GLTKVSAEPV TDVKFIARKG WFVAVSSDCV VHVYHYEKEM RKVTSFRALG RADVWCTLAV HPTQPYVLSG CATEIKLWDL NCIQTFEEHS
301: AAIMALKFNP EDTNSFASAS HDTTIKVWSI DSPKSKYTLF GHRHVVNFLD FFTRDGQQYL ISGSWDATAK IWDMDKKECV HTLEHESAVF QVVSHPNLPV
401: LITGTKDGDV HAWSSNDFR
001: MPLRLEIKRK LAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQVMA KSFEVTELPV RSAKFVARKQ WVVAGADDMY IRVYNYNTMD KVKVFEAHSD
101: YIRCVAVHPT LPYVLSSSDD MLIKLWDWEK GWACTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTIKIW NLGSPDPNFT LDAHQKGVNC VDYFTGGDKP
201: YLITGSDDHT AKVWDYQTKS CVQTLEGHTH NVSAVCFHPE LPIIITGSED GTVRIWHATT YRLENTLNYG LERVWAIGYI KSSRRVVIGY DEGTIMVKLG
301: REIPVASMDN TGKIIWAKHN EIQTANIKSI GADYEVTDGE RLPLSVKELG TCDLYPQSLK HNPNGRFVVV CGDGEYIIYT ALAWRNRSFG SGLEFVWSSE
401: GECAVRESSS KIKIFSKNFQ EKRSIRPTFS AEKIFGGTLL AMCSSDFICF YDWAECRLIQ RIDVTVKNLY WADSGDLVAI ASDTSFYILK FNRDLVTSHF
501: DSGRPTEEEG VEDAFEVLHE NDERVRTGIW VGDCFIYNNS SWKLNYCVGG EVTTMYHLDR PMYLLGYLAS QSRVFLVDKE FNVIGYTLLL SLIEYKTLVM
601: RGDLDKASEI LPTIPKDQHN SVAHFLESRG MIEDALEIAT DPDYRFELAI QLGRLEIAQE IAVEVQSESK WKQLGELAMS SGKLQMAEEC MKYAMDLSGL
701: LLLYSSLGDA EGVTKLATLA KEQGKNNVAF LCLFMLGKLE DCLQLLVESN RIPEAALMAR SYLPSKVSEI VALWRKDLSK VNSKAAESLA DPEEYSNLFE
801: DWQVALSVEA KAVETRGVYT GAKDYPSHAD KSSMTLVEAF RNLQVEEEES LENGDMDHEE VVAEENGNEQ RNEDDVAEHV EEHHEEKEAE EEEGIVDGDS
901: TDGAVLVNGS EADEEWGTNN EGNPSA
101: YIRCVAVHPT LPYVLSSSDD MLIKLWDWEK GWACTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTIKIW NLGSPDPNFT LDAHQKGVNC VDYFTGGDKP
201: YLITGSDDHT AKVWDYQTKS CVQTLEGHTH NVSAVCFHPE LPIIITGSED GTVRIWHATT YRLENTLNYG LERVWAIGYI KSSRRVVIGY DEGTIMVKLG
301: REIPVASMDN TGKIIWAKHN EIQTANIKSI GADYEVTDGE RLPLSVKELG TCDLYPQSLK HNPNGRFVVV CGDGEYIIYT ALAWRNRSFG SGLEFVWSSE
401: GECAVRESSS KIKIFSKNFQ EKRSIRPTFS AEKIFGGTLL AMCSSDFICF YDWAECRLIQ RIDVTVKNLY WADSGDLVAI ASDTSFYILK FNRDLVTSHF
501: DSGRPTEEEG VEDAFEVLHE NDERVRTGIW VGDCFIYNNS SWKLNYCVGG EVTTMYHLDR PMYLLGYLAS QSRVFLVDKE FNVIGYTLLL SLIEYKTLVM
601: RGDLDKASEI LPTIPKDQHN SVAHFLESRG MIEDALEIAT DPDYRFELAI QLGRLEIAQE IAVEVQSESK WKQLGELAMS SGKLQMAEEC MKYAMDLSGL
701: LLLYSSLGDA EGVTKLATLA KEQGKNNVAF LCLFMLGKLE DCLQLLVESN RIPEAALMAR SYLPSKVSEI VALWRKDLSK VNSKAAESLA DPEEYSNLFE
801: DWQVALSVEA KAVETRGVYT GAKDYPSHAD KSSMTLVEAF RNLQVEEEES LENGDMDHEE VVAEENGNEQ RNEDDVAEHV EEHHEEKEAE EEEGIVDGDS
901: TDGAVLVNGS EADEEWGTNN EGNPSA
Arabidopsis Description
Coatomer subunit beta' [Source:UniProtKB/TrEMBL;Acc:F4ICX0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.