Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G189900.1 | Wheat | cytosol | 1.53 | 1.51 |
| Os04t0369000-01 | Rice | cytosol, plasma membrane | 0.61 | 1.46 |
| TraesCSU01G255000.1 | Wheat | cytosol | 0.92 | 1.35 |
| TraesCSU01G211600.1 | Wheat | cytosol | 0.92 | 1.12 |
| TraesCSU01G200200.1 | Wheat | cytosol, vacuole | 0.31 | 0.57 |
| TraesCSU01G192700.1 | Wheat | cytosol | 0.61 | 0.48 |
Protein Annotations
| EnsemblPlants:TraesCSU01G050800.1 | EnsemblPlantsGene:TraesCSU01G050800 | Gene3D:2.100.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030246 |
| InterPro:IPR001229 | InterPro:IPR036404 | InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | PFAM:PF01419 |
| PFscan:PS51752 | SEG:seg | SMART:SM00915 | SUPFAM:SSF51101 | TIGR:cd09612 | MapMan:35.1 |
Description
No Description!
Coordinates
chrUn:-:40642373..40644933
Molecular Weight (calculated)
34810.0 Da
IEP (calculated)
5.932
GRAVY (calculated)
-0.020
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDKALMMK IGPWGGHSGY LKDIKEAPLC LNSVTIRSGK VVYSLAFSYS DGHGKQHHAG PWGICESFSY GRFDTIQLSS FEFLAEISGT IGFSTQYSAN
101: VVTSIKFITN VGSYGPFGAG GGIPFHSPLL GKGSIVGFFA HVGKALDAIG LYVNSERQPT REAVSIMKVG PWGGSSGLCN DVAVLPQRLV SVVVHSGEVV
201: NSLSFTYSDC NGQVHIAGPW GRTVESHDGS SHQILLGDSE FLMEISGTVG PSPDHSDVVS SLLFVTNASS YGPYGQGGGT RFQSPRQRDA VIVGFFANGR
301: EFIEAIGVYF SPQEGTNEEE VQNFFP
101: VVTSIKFITN VGSYGPFGAG GGIPFHSPLL GKGSIVGFFA HVGKALDAIG LYVNSERQPT REAVSIMKVG PWGGSSGLCN DVAVLPQRLV SVVVHSGEVV
201: NSLSFTYSDC NGQVHIAGPW GRTVESHDGS SHQILLGDSE FLMEISGTVG PSPDHSDVVS SLLFVTNASS YGPYGQGGGT RFQSPRQRDA VIVGFFANGR
301: EFIEAIGVYF SPQEGTNEEE VQNFFP
001: MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT ICVRSLTFES NRRKYGPFGV DSGTFFALPK
101: SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE
201: KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI
301: KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH NNSGTAQIEN SPWANKLVLA ANGHGEEVDR
401: GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT HRIKFEYPDE SITCISGYYG PLNNSDRYNV
501: VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL F
101: SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE
201: KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI
301: KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH NNSGTAQIEN SPWANKLVLA ANGHGEEVDR
401: GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT HRIKFEYPDE SITCISGYYG PLNNSDRYNV
501: VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL F
Arabidopsis Description
JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.