Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 34.79 | 40.53 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 33.74 | 40.46 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 37.76 | 37.05 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 36.89 | 36.38 |
| VIT_07s0141g00780.t01 | Wine grape | plastid | 37.94 | 34.61 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 38.29 | 34.27 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 32.87 | 33.51 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 24.83 | 32.05 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ProteinID:CBI26377 | ProteinID:CBI26377.3 | ncoils:Coil | UniProt:D7T7A6 |
| EMBL:FN595749 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0043531 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF1657 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001BE291C |
| ArrayExpress:VIT_05s0020g04920 | EnsemblPlantsGene:VIT_05s0020g04920 | EnsemblPlants:VIT_05s0020g04920.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:6782085..6784040
Molecular Weight (calculated)
63558.5 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.084
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQKNAASSS RSILQKSDIP YSLSSLFKNP PQRSGSNSKS EKIGTKASLS PFESLRAVGC GFGVFGGFLK RGFEPDAVTV TTLVKGVWME NGIPDAVQLF
101: DEMTEKGLFG DAKTYGILIN GLCKARKTGL AIKLHEKMKG NCKGDVFTYG MIIDSLCKDG MTTEALDMFS EMIGAGILPD VVVYSSLMDG LCRFGRLKEA
201: LEFFKEMEGR GISADVYTYN SLIHGLSRAG LWKEVTWFLN LMVDRGFSPD AFTFTILIDG LCKEGKVGEA QQILELMHHK GKEPDILTYN TLMNGLCLVG
301: QLEDATKLFE SLADRGIKLN VFSYNILING YCKDQKIDEA FRLFEEMRPK GLKPSTVTYN TLIGALCQSG RVRTAQKLFV EMQTCGQFLK LSTYCVLLDG
401: LCKNGHLEEA IDLFQSIKKT EHKPNIEVFS ILLDGMCRAG KLEEAWKQFD EISKNGLEPD TIAYNILING LCNKGMLSEA VKLLWQMEEK GCLPDSITFN
501: VIIQNLLKEN EIHEAIQLLE EMRNRNFSPD EAVTSMLLCL ASFDPQWHAA LVSLPNALQK GVGSVPVKRR KT
101: DEMTEKGLFG DAKTYGILIN GLCKARKTGL AIKLHEKMKG NCKGDVFTYG MIIDSLCKDG MTTEALDMFS EMIGAGILPD VVVYSSLMDG LCRFGRLKEA
201: LEFFKEMEGR GISADVYTYN SLIHGLSRAG LWKEVTWFLN LMVDRGFSPD AFTFTILIDG LCKEGKVGEA QQILELMHHK GKEPDILTYN TLMNGLCLVG
301: QLEDATKLFE SLADRGIKLN VFSYNILING YCKDQKIDEA FRLFEEMRPK GLKPSTVTYN TLIGALCQSG RVRTAQKLFV EMQTCGQFLK LSTYCVLLDG
401: LCKNGHLEEA IDLFQSIKKT EHKPNIEVFS ILLDGMCRAG KLEEAWKQFD EISKNGLEPD TIAYNILING LCNKGMLSEA VKLLWQMEEK GCLPDSITFN
501: VIIQNLLKEN EIHEAIQLLE EMRNRNFSPD EAVTSMLLCL ASFDPQWHAA LVSLPNALQK GVGSVPVKRR KT
001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.