Factsheet for VIT_06s0061g01390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g01400.t01	Wine grape	nucleus	56.92	68.25
VIT_08s0007g03790.t01	Wine grape	nucleus, plastid	43.08	51.42
VIT_16s0100g00380.t01	Wine grape	nucleus	38.74	44.95
VIT_02s0025g04460.t01	Wine grape	nucleus	37.94	40.85
VIT_11s0016g02140.t01	Wine grape	nucleus	23.32	40.14

Protein Annotations

EntrezGene:100248181	wikigene:100248181	MapMan:15.5.7.2	Gene3D:3.30.730.10	ProteinID:AAR28677	ProteinID:AAR28677.1
ProteinID:AIL00575.1	EMBL:AM480138	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EMBL:AY390376	ProteinID:CAN75246
ProteinID:CAN75246.1	ProteinID:CCB44178	ProteinID:CCB44178.1	InterPro:DNA-bd_dom_sf	UniProt:F6GW43	EMBL:FN594957
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EntrezGene:LOC100248181	wikigene:LOC100248181	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31839
PANTHER:PTHR31839:SF8	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC65941	UniParc:UPI0001983927	ArrayExpress:VIT_06s0061g01390
EnsemblPlantsGene:VIT_06s0061g01390	EnsemblPlants:VIT_06s0061g01390.t01	unigene:Vvi.19381	RefSeq:XP_002270637	RefSeq:XP_002270637.1	SEG:seg

Description

C-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:F6GW43]

Coordinates

chr6:-:19216576..19217622

Molecular Weight (calculated)

27903.9 Da

IEP (calculated)

10.512

GRAVY (calculated)

-0.599

Length

253 amino acids

Sequence
(BLAST)

001: MDLDRESSAS SSSPTSSPSR ANPVSSDSRC PSRCIPHKRK TGRKKFRKTR HPIYRGVRQR NENKWVSEVR EPSKKSRIWL GTFPTPEMAA RAHDAAALAL
101: RGHFASLNFP DSAWRLPRAR SSSAGDVQFA AIQAAKAFQQ PPSSSSSTPF VMDNMSAGSR KILETSSVVD TPQLKSQKKV VGVSSMDSKR REKAGDGFRT
201: AFVDEEAMFN MPGLIDSMAE GLLLTPPAMC EGFSWDDAVS HIDLSLWNHD FLS

Best Arabidopsis Sequence Match ( AT5G51990.1 )
(BLAST)

001: MNPFYSTFPD SFLSISDHRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL
101: RGRSACLNFA DSAWRLRIPE TTCPKEIQKA ASEAAMAFQN ETTTEGSKTA AEAEEAAGEG VREGERRAEE QNGGVFYMDD EALLGMPNFF ENMAEGMLLP
201: PPEVGWNHND FDGVGDVSLW SFDE

Arabidopsis Description

DREB1DC-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.