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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • nucleus 3
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CAA33986 Rice nucleus 98.14 98.23
GRMZM5G877454_P01 Maize plastid 98.14 98.23
HORVU3Hr1G036620.1 Barley mitochondrion 3.16 97.14
HORVU2Hr1G121960.2 Barley nucleus 84.94 90.76
HORVU2Hr1G043280.1 Barley cytosol, nucleus 11.62 88.03
GSMUA_Achr10P... Banana cytosol 1.77 76.0
OQU84733 Sorghum mitochondrion 21.47 70.43
HORVU0Hr1G036760.2 Barley nucleus 18.31 68.4
Zm00001d000270_P001 Maize plastid 94.05 43.12
HORVU7Hr1G020140.1 Barley cytosol 1.86 12.5
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6MapMan:15.6.1.2.1.2Gene3D:2.30.150.10Gene3D:2.40.270.10Gene3D:2.40.50.100
Gene3D:2.40.50.150Gene3D:3.90.1100.10Gene3D:3.90.1110.10Gene3D:3.90.1800.10EntrezGene:4525093EnsemblPlants:AGP50745
EnsemblPlantsGene:AGP50745ProteinID:AGP50745ProteinID:AGP50745.1ProteinID:AMA20236.1ncoils:CoilInterPro:DNA-dir_RNAP_su2_dom
InterPro:DNA-dir_RNAP_su2_hyb_sfInterPro:DNA-dir_RNA_pol_su2GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824
GO:GO:0003899GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006139GO:GO:0006351GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0016740GO:GO:0016779GO:GO:0032549InterPro:IPR014724
InterPro:IPR037033InterPro:IPR037034ENA:KC912687.1:CDS:19544..22774HAMAP:MF_01321PFAM:PF00562PFAM:PF04560
PFAM:PF04561PFAM:PF04563PFAM:PF04565ScanProsite:PS01166PANTHER:PTHR20856PANTHER:PTHR20856:SF20
InterPro:RNA_pol_RPB2_OB-foldInterPro:RNA_pol_Rpb2_2InterPro:RNA_pol_Rpb2_2_sfInterPro:RNA_pol_Rpb2_3InterPro:RNA_pol_Rpb2_7InterPro:RNA_pol_bsu_CS
InterPro:RNA_pol_bsu_bacInterPro:RNA_pol_bsu_protrusionGO:S4Z1W1UniProt:S4Z1W1SUPFAM:SSF64484UniParc:UPI0000E8A88E
RefSeq:YP_874643.1SEG:seg::::
Description
rpoBRNA polymerase beta subunit
Coordinates
chrPt:+:19544..22774
Molecular Weight (calculated)
121661.0 Da
IEP (calculated)
9.201
GRAVY (calculated)
-0.311
Length
1076 amino acids
Sequence
(BLAST)
0001: MLRNGNEGMS TIPGFSQIQF EGFFRFINQA LAEELDKFPT IKDPDHEIAF QLFAKGYQLL EPSIKERDAV YESLTYSSEL YVSARLIFGF DVQKQTISIG
0101: NIPIMNSLGT FIINGIYRIV INQILLSPGI YYRSELDHKG ISIYTGTIIS DWGGRSELAI DKKERIWARV SRKQKISILV LSSAMGSNLR EILDNVSYPE
0201: IFLSFPNAKE KKRIESKEKA ILEFYQQFAC VGGDLVFSES LCEELQKKFF QQKCELGRIG RRNMNRRLNL DIPQNNTFLL PRDVLAATDH LIGMKFGTGI
0301: LDDDDMNHLK NKRIRSVADL LQDQFGLALG RLQHAVQKTI RRVFIRQSKP TPQTLVTPTS TSILLITTYE TFFGTYPLSQ VFDQTNPLTQ TVHGRKVSCL
0401: GPGGLTGRTA SFRSRDIHPS HYGRICPIDT SEGINVGLTG SLAIHARIDH LWGSIESPFY EISAEKAKEK KERQVVYLSP NRDEYYMIAA GNSLSLNQGI
0501: QEEQVVPARY RQEFLTIAWE QIHVRSIFPF QYFSIGGSLI PFIEHNDANR ALMSSNMQRQ AVPLSRSEKC IVGTGLERQT ALDSRVSVIA EREGKIISTD
0601: SHKILLSSSG KTISIPLVNH RRSNKNTCMH QKPRVPRGKS IKKGQILAEG AATVGGELAL GKNVLVAYMP WEGYNFEDAV LISERLVYED IYTSFHIRKY
0701: EIQTDTTSQG SAEKITKEIP HLEEHLLRNL DKNGVVRLGS WVETGDILVG KLTPQIASES SYIAEAGLLR AIFGLEVSTS KETSLKLPIG GRGRVIDVKW
0801: IQRDPLDIMV RVYILQKREI KVGDKVAGRH GNKGIISKIL PRQDMPYLQD GTPVDMVFNP LGVPSRMNVG QIFESSLGLA GDLLKKHYRI APFDERYEQE
0901: ASRKLVFSEL YEASKETKNP WVFEPEYPGK SRIFDGRTGD PFEQPVLIGK SYILKLIHQV DEKIHGRSTG PYSLVTQQPV RGRAKQGGQR VGEMEVWALE
1001: GFGVAHILQE ILTYKSDHLI ARQEILNATI WGKRIPNHED PPESFRVLVR ELRSLALELN HFLVSEKNFQ VNREEV
Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Arabidopsis Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.