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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AGP50745 Barley nucleus 98.23 98.14
GRMZM5G877454_P01 Maize plastid 97.95 97.95
HORVU3Hr1G036620.1 Barley mitochondrion 3.16 97.14
TraesCS5D01G007600.1 Wheat plastid 20.93 96.98
GSMUA_Achr10P... Banana cytosol 1.77 76.0
OQU84733 Sorghum mitochondrion 21.67 71.04
HORVU0Hr1G036760.2 Barley nucleus 18.23 68.06
Zm00001d000270_P001 Maize plastid 94.05 43.08
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6MapMan:15.6.1.2.1.2Gene3D:2.30.150.10Gene3D:2.40.270.10Gene3D:2.40.50.100
Gene3D:2.40.50.150Gene3D:3.90.1100.10Gene3D:3.90.1110.10Gene3D:3.90.1800.10EntrezGene:3131432UniProt:A0A0K0LQV7
ProteinID:AAS46111.1ProteinID:AJC99303.1ProteinID:AJC99392.1EnsemblPlants:CAA33986EnsemblPlantsGene:CAA33986ProteinID:CAA33986
ProteinID:CAA33986.1InterPro:DNA-dir_RNAP_su2_domInterPro:DNA-dir_RNAP_su2_hyb_sfInterPro:DNA-dir_RNA_pol_su2GO:GO:0000428GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006351
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009295GO:GO:0009507
GO:GO:0009536GO:GO:0009561GO:GO:0009987GO:GO:0016740GO:GO:0016779GO:GO:0032549
InterPro:IPR014724InterPro:IPR037033InterPro:IPR037034HAMAP:MF_01321RefSeq:NP_039373.1UniProt:P0C503
PFAM:PF00562PFAM:PF04560PFAM:PF04561PFAM:PF04563PFAM:PF04565ScanProsite:PS01166
PANTHER:PTHR20856PANTHER:PTHR20856:SF20InterPro:RNA_pol_RPB2_OB-foldInterPro:RNA_pol_Rpb2_2InterPro:RNA_pol_Rpb2_2_sfInterPro:RNA_pol_Rpb2_3
InterPro:RNA_pol_Rpb2_7InterPro:RNA_pol_bsu_CSInterPro:RNA_pol_bsu_bacInterPro:RNA_pol_bsu_protrusionSUPFAM:SSF64484UniParc:UPI00001346ED
SEG:seg:::::
Description
rpoBRNA polymerase beta subunit
Coordinates
chrPt:+:19214..22441
Molecular Weight (calculated)
121649.0 Da
IEP (calculated)
9.443
GRAVY (calculated)
-0.321
Length
1075 amino acids
Sequence
(BLAST)
0001: MLRNGNEGMS TIPGFSQIQF EGFCRFINQG LAEELEKFPT IKDPDHEISF QLFAKGYQLL EPSIKERDAV YESLTYSSEL YVSARLIFGF DVQKQTISIG
0101: NIPIMNSLGT FIINGIYRIV INQILLSPGI YYRSELDHKG ISIYTGTIIS DWGGRSELAI DKKERIWARV SRKQKISILV LSSAMGSNLK EILDNVSYPE
0201: IFLSFPNAKE KKRIESKEKA ILEFYQQFAC VGGDLVFSES LCEELQKKFF QQKCELGRIG RRNMNRRLNL DIPQNSTFLL PRDVLAATDH LIGMKFETGI
0301: LDDDDMNHLK NKRIRSVADL LQDQFGLALG RLQHAVQKTI RRVFIRQSKP TPQTLVTPTS TSILLITTYE TFFGTYPLSQ VFDQTNPLTQ TVHGRKVSCL
0401: GPGGLTGRTA SFRSRDIHPS HYGRICPIDT SEGINVGLTG SLAIHARIDH WWGSVESPFY EISEKAKKKK ERQVVYLSPN RDEYYMIAAG NSLSLNRGIQ
0501: EEQVVPARYR QEFLTIAWEQ IHVRSIFPFQ YFSIGGSLIP FIEHNDANRA LMSSNMQRQA VPLSRSEKCI VGTGLERQTA LDSRVSVIAE REGKIISTNS
0601: HKILLSSSGK TISIPLVTHR RSNKNTCMHQ KPRVPRGKSI KKGQILAEGA ATVGGELALG KNVLVAYMPW EGYNFEDAVL ISERLVYEDI YTSFHIRKYE
0701: IQTDTTSQGS AEKITKEIPH LEEHLLRNLD RNGVVKLGSW VETGDILVGK LTPQIASESS YIAEAGLLRA IFGLEVSTSK ETSLKLPIGG RGRVIDVKWI
0801: QRDPLDIMVR VYILQKREIK VGDKVAGRHG NKGIISKILP RQDMPYLQDG TPVDMVFNPL GVPSRMNVGQ IFESSLGLAG DLLKKHYRIA PFDERYEQEA
0901: SRKLVFSELY EASKQTKNPW VFEPEYPGKS RIFDGRTGDP FEQPVLIGKS YILKLIHQVD EKIHGRSTGP YSLVTQQPVR GRAKQGGQRI GEMEVWALEG
1001: FGVAHILQEI LTYKSDHLIA RQEILNATIW GKRVPNHEDP PESFRVLVRE LRSLALELNH FLVSQKNFQV NREEV
Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Arabidopsis Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.