Factsheet for TraesCS5D01G007600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 18071923

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84733	Sorghum	mitochondrion	83.19	58.84
HORVU0Hr1G036760.2	Barley	nucleus	66.38	53.47
CAA33986	Rice	nucleus	96.98	20.93
GRMZM5G877454_P01	Maize	plastid	96.55	20.84
Zm00001d000270_P001	Maize	plastid	92.24	9.12
TraesCS5D01G011600.1	Wheat	mitochondrion	2.16	5.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:2.40.270.10	Gene3D:3.90.1800.10	MapMan:35.1	InterPro:DNA-dir_RNAP_su2_dom
InterPro:DNA-dir_RNAP_su2_hyb_sf	InterPro:DNA-dir_RNA_pol_su2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0032549	InterPro:IPR037033	PFAM:PF00562
PFAM:PF04560	PANTHER:PTHR20856	PANTHER:PTHR20856:SF20	InterPro:RNA_pol_Rpb2_7	SUPFAM:SSF64484	EnsemblPlantsGene:TraesCS5D01G007600
EnsemblPlants:TraesCS5D01G007600.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:6164773..6165977

Molecular Weight (calculated)

26643.9 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.483

Length

232 amino acids

Sequence
(BLAST)

001: MPYLQDGTPI DMVFNPLGVP SRMNVGQIFE SSLGLAGDLL KKHYRIAPFD ERYEQEASRK LVFSELYEAG KETKNPWVFE PEYPGKSRIF DGRTGDPFEQ
101: PVLIGKSYIL KLIHQVDEKI HGRSTGPYSL VTQQPVRGRA KQGGQRVGEM EVWALEEFGV AHILQEILTY KSDHLIARQE ILNATIWGKR IPNHEDPPES
201: FRVLVRELRS LALELNHFLV SEKNFQVNRE EV

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.