Factsheet for GRMZM5G877454_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50745	Barley	nucleus	98.23	98.14
CAA33986	Rice	nucleus	97.95	97.95
HORVU3Hr1G036620.1	Barley	mitochondrion	3.16	97.14
TraesCS5D01G007600.1	Wheat	plastid	20.84	96.55
GSMUA_Achr10P...	Banana	cytosol	1.77	76.0
OQU84733	Sorghum	mitochondrion	21.58	70.73
Zm00001d030443_P001	Maize	nucleus	10.88	68.42
HORVU0Hr1G036760.2	Barley	nucleus	18.05	67.36
Zm00001d000270_P001	Maize	plastid	95.53	43.76

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.6.1.2.1.2	Gene3D:2.30.150.10	Gene3D:2.40.270.10	Gene3D:2.40.50.100
Gene3D:2.40.50.150	Gene3D:3.90.1100.10	Gene3D:3.90.1110.10	Gene3D:3.90.1800.10	EntrezGene:845225	ProteinID:AAA84490.1
ProteinID:CAA35195.1	ProteinID:CAA60276.1	InterPro:DNA-dir_RNAP_su2_dom	InterPro:DNA-dir_RNAP_su2_hyb_sf	InterPro:DNA-dir_RNA_pol_su2	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0032549	EnsemblPlantsGene:GRMZM5G877454	EnsemblPlants:GRMZM5G877454_P01	EnsemblPlants:GRMZM5G877454_T01	InterPro:IPR014724
InterPro:IPR037033	InterPro:IPR037034	HAMAP:MF_01321	UniProt:P16023	PFAM:PF00562	PFAM:PF04560
PFAM:PF04561	PFAM:PF04563	PFAM:PF04565	ScanProsite:PS01166	PANTHER:PTHR20856	PANTHER:PTHR20856:SF20
InterPro:RNA_pol_RPB2_OB-fold	InterPro:RNA_pol_Rpb2_2	InterPro:RNA_pol_Rpb2_2_sf	InterPro:RNA_pol_Rpb2_3	InterPro:RNA_pol_Rpb2_7	InterPro:RNA_pol_bsu_CS
InterPro:RNA_pol_bsu_bac	InterPro:RNA_pol_bsu_protrusion	SUPFAM:SSF64484	UniParc:UPI00001346E0	SEG:seg	:

Description

rpoBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P16023]

Coordinates

chrPt:+:21468..24695

Molecular Weight (calculated)

121579.0 Da

IEP (calculated)

9.340

GRAVY (calculated)

-0.314

Length

1075 amino acids

Sequence
(BLAST)

0001: MLRNGNEGMS TIPGFSQIQF EGFCRFINQG LAEELEKFPT IKDPDHEIAF QLFAKGYQLL EPSIKERNAV YESLTYSSEL YVSARLIFGF DVQKETISIG
0101: NIPIMNSLGT FIINGIYRIV INQILLSPGI YYRSELDHKG ISIYTGTIIS DWGGRSELAI DKKERIWARV SRKQKISILV LSSAMGSNLR EILDNVSYPE
0201: IFLSFPNAKE KKRIESKEKA ILEFYQQFAC VGGDLVFSES LCEELQKKFF QQKCELGRVG RRNMNRRLNL DIPQNNTFLL PRDVLAATDH LIGMKFGTGI
0301: LDDDDMNHLK NKRIRSVADL LQDQFGLALG RLQHAVQKTI RRVFIRQSKP TPQTLVTPTS TSILLITTYE TFFGTYPLAQ VFDQTNPLTQ TVHGRKVSCL
0401: GPGGLTGRTA SFRSRDIHPS HYGRICPIDT SEGINVGLTG SLAIHARIDH WWGSIESPFY EISEKAKEKK ERQVVYLSPN RDEYYMIAAG NSLSLNQGIQ
0501: EEQVVPARYR QEFLTIAWEQ IHVRSIFPFQ YFSIGGSLIP FIEHNDANRA LMSSNMQRQA VPLSRSEKCI VGTGLERQTA LDSRVSVIAQ REGKIISSDS
0601: HKILLSSSGK TISIPLVAHR RSNKNTCMHQ KPRVPRGKSI KKGQILAEGA ATVGGELALG KNVLVAYMPW EGYNFEDAVL ISERLVYEDI YTSFHIRKYE
0701: IQTDTTSQGS AEKITKQIPH LEEHLLRNLD RNGVVRLGSW VETGDILVGK LTPQIASESS YIAEAGLLRA IFGLEVSTSK ETSLKLPIGG RGRVIDVKWI
0801: QRDPFDIMVR VYILQKREIK VGDKVAGRHG NKGIISKILP RQDMPYLQDG APVDMVFNPL GVPSRMNVGQ IFESSLGLAG DLLKKHYRIA PFDERYEQEA
0901: SRKLVFSELY EASKQTKNPW VFEPEYPGKS RIFDGRTGDP FEQPVLIGKS YILKLIHQVD EKIHGRSTGP YSLVTQQPVR GRAKQGGQRI GEMEVWALEG
1001: FGVAHILQEI LTYKSDHLIA RQEILNATIW GKRMPNHEDP PESFRVLVRE LRSLALELNH FLVSEKNFQV NREDV

Best Arabidopsis Sequence Match ( ATCG00190.1 )
(BLAST)

0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV

Arabidopsis Description

RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.