Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
18453340
plastid: 23198870 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G036620.1 | Barley | mitochondrion | 1.45 | 97.14 |
| GRMZM5G877454_P01 | Maize | plastid | 43.76 | 95.53 |
| AGP50745 | Barley | nucleus | 43.12 | 94.05 |
| CAA33986 | Rice | nucleus | 43.08 | 94.05 |
| TraesCS5D01G007600.1 | Wheat | plastid | 9.12 | 92.24 |
| GSMUA_Achr10P... | Banana | cytosol | 0.81 | 76.0 |
| OQU84733 | Sorghum | mitochondrion | 9.88 | 70.73 |
| HORVU0Hr1G036760.2 | Barley | nucleus | 8.31 | 67.71 |
| Zm00001d030443_P001 | Maize | nucleus | 4.6 | 63.16 |
Protein Annotations
Description
DNA-directed RNA polymerase subunit beta
Coordinates
chrB73V4_ctg134:+:17567..34209
Molecular Weight (calculated)
265281.0 Da
IEP (calculated)
6.294
GRAVY (calculated)
-0.360
Length
2347 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRNGNEGMS TIPGFSQIQF EGFCRFINQG LAEELEKFPT IKDPDHEIAF QLFAKGYQLL EPSIKERNAV YESLTYSSEL YVSARLIFGF DVQKETISIG
0101: NIPIMNSLGT FIINGIYRIV INQILLSPGI YYRSELDHKG ISIYTGTIIS DWGGRSELAI DKKERIWARV SRKQKISILV LSSAMGSNLR EILDNVSYPE
0201: IFLSFPNAKE KKRIESKEKA ILEFYQQFAC VGGDLVFSES LCEELQKKFF QQKCELGRVG RRNMNRRLNL DIPQNNTFLL PRDVLAATDH LIGMKFGTGI
0301: LDDDDMNHLK NKRIRSVADL LQDQFGLALG RLQHAVQKTI RRVFIRQSKP TPQTLVTPTS TSILLITTYE TFFGTYPLAQ VFDQTNPLTQ TVHGRKVSCL
0401: GPGGLTGRTA SFRSRDIHPS HYGRICPIDT SEGINVGLTG SLAIHARIDH WWGSIESPFY EISEKAKEKK ERQVVYLSPN RDEYYMIAAG NSLSLNQGIQ
0501: EEQVVPARYR QEFLTIAWEQ IHVRSIFPFQ YFSIGGSLIP FIEHNDANRA LMSSNMQRQA VPLSRSEKCI VGTGLERQTA LDSRVSVIAQ REGKIISSDS
0601: HKILLSSSGK TISIPLVAHR RSNKNTCMHQ KPRVPRGKSI KKGQILAEGA ATVGGELALG KNVLVAYMPW EGYNFEDAVL ISERLVYEDI YTSFHIRKYE
0701: IQTDTTSQGS AEKITKQIPH LEEHLLRNLD RNGVVRLGSW VETGDILVGK LTPQIASESS YIAEAGLLRA IFGLEVSTSK ETSLKLPIGG RGRVIDVKWI
0801: QRDPFDIMVR VYILQKREIK VGDKVAGRHG NKGIISKILP RQDMPYLQDG TPVDMVFNPL GVPSRMNVGQ IFESSLGLAG DLLKKHYRIA PFDERYEQEA
0901: SRKLVFSELY EASKQTKNPW VFEPEYPGKS RIFDGRTGDP FEQPVLIGKS YILKLIHQVD EKIHGRSTGP YSLVTQQPVR GRAKQGGQRI GEMEVWALEG
1001: FGVAHILQEI LTYKSDHLIA RQEILNATIW GKRVPNHEDP PESFRVLVRE LRSLALELNH FLVSEKNFQE LEDEGYSGDE WEDRKRRIRK VFLIRRMQLA
1101: KHFIQTNVEP EWMVLCLLPV LPPELRPIVY RSGDKVVTSD INELYKRVIR RNNNLAYLLK RSELAPADLV MCQEKLVQEA VDTLLDSGSR GQPTRDGHNK
1201: VYKSLSDVIE GKEGRFRETL LGKRVDYSGR SVIVVGPSLS LHQCGLPLEI AIKLFQLFVI RDLITKRATS NVRIAKRKIW EKEPIVWEIL QEVMRGHPVL
1301: LNRAPTLHRL GIQAFQPTLV EGRTICLHPL VCKGFNADFD GDQMAVHLPL SLEAQAEARL LMFSHMNLLS PAIGDPICVP TQDMLIGLYV LTIGNRLGAR
1401: GNASQVHQLV GMRGLMADPQ GQMIDLPIQS NLREGLSLTE YIISCYGARK GVVDTAVRTA DAGYLTRRLV EVVQHIIVRR RDCGTIQESE QVIAEIRAGT
1501: STLHFKEKDQ DQMNTYSFSV DGRYIFDFSM ANDQVSHRLL DTFGKKDREI LDYLTPDRIV FNGHWNCFYP SILQDNSDLL AKKRRNRLVV PLQYHQEQEK
1601: ERISCLGISM EIPFMGVLRR NTIFAYFDDP RYRKDKRGSG IVKFRYRTLE EEYRTQEEEY RTREEEYRTR EEDSEDEYES PENKYRTREG EGEYKILEDE
1701: YRTLEDEYET LEDEYGILED EYRTLEKDSE EEYGSLENKY RTREGEGEYE ILEEESEEEY GSSEDGSEKE YGTLEEDSEE DSEEDSEDEY GSPEEDSILK
1801: KEGFIEHRGT KEFSLKYQKE VDRFFFILQE LHILPRSSSL KELIMNPLIA AASVIAAGLA VGLASIGPGV GQGTAAGQAV EGIARQPEAE GELVEFAEGT
1901: RGIALNLESK NVGIVLMGDG LMIQEGSFVK ATGRIAQIPV SEAYLGRVIN ALAKPIDGRG EIVASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI
2001: GRGQRELIIG DRQTGKTAVA TDTILNQKGQ DVICVYVAIG QRASSVAQVV TTFHEEGAME YTIVVAEMAD SPATLQYLAP YTGAALAEYF MYRERHTLII
2101: YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE RAAKLNSLLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV
2201: GISVSRVGSA AQIKAMKQVA GKSKLELAQF AELQAFAQFA SALDKTSQNQ LARGRRLREL LKQSQSNPLP VEEQVATIYT GTRGYLDSLE IEQVKKFLDE
2301: LRKHLKDTKP QFQEIISSSK TFTEQAETLL KEAIQEQLER FSLQEQT
0101: NIPIMNSLGT FIINGIYRIV INQILLSPGI YYRSELDHKG ISIYTGTIIS DWGGRSELAI DKKERIWARV SRKQKISILV LSSAMGSNLR EILDNVSYPE
0201: IFLSFPNAKE KKRIESKEKA ILEFYQQFAC VGGDLVFSES LCEELQKKFF QQKCELGRVG RRNMNRRLNL DIPQNNTFLL PRDVLAATDH LIGMKFGTGI
0301: LDDDDMNHLK NKRIRSVADL LQDQFGLALG RLQHAVQKTI RRVFIRQSKP TPQTLVTPTS TSILLITTYE TFFGTYPLAQ VFDQTNPLTQ TVHGRKVSCL
0401: GPGGLTGRTA SFRSRDIHPS HYGRICPIDT SEGINVGLTG SLAIHARIDH WWGSIESPFY EISEKAKEKK ERQVVYLSPN RDEYYMIAAG NSLSLNQGIQ
0501: EEQVVPARYR QEFLTIAWEQ IHVRSIFPFQ YFSIGGSLIP FIEHNDANRA LMSSNMQRQA VPLSRSEKCI VGTGLERQTA LDSRVSVIAQ REGKIISSDS
0601: HKILLSSSGK TISIPLVAHR RSNKNTCMHQ KPRVPRGKSI KKGQILAEGA ATVGGELALG KNVLVAYMPW EGYNFEDAVL ISERLVYEDI YTSFHIRKYE
0701: IQTDTTSQGS AEKITKQIPH LEEHLLRNLD RNGVVRLGSW VETGDILVGK LTPQIASESS YIAEAGLLRA IFGLEVSTSK ETSLKLPIGG RGRVIDVKWI
0801: QRDPFDIMVR VYILQKREIK VGDKVAGRHG NKGIISKILP RQDMPYLQDG TPVDMVFNPL GVPSRMNVGQ IFESSLGLAG DLLKKHYRIA PFDERYEQEA
0901: SRKLVFSELY EASKQTKNPW VFEPEYPGKS RIFDGRTGDP FEQPVLIGKS YILKLIHQVD EKIHGRSTGP YSLVTQQPVR GRAKQGGQRI GEMEVWALEG
1001: FGVAHILQEI LTYKSDHLIA RQEILNATIW GKRVPNHEDP PESFRVLVRE LRSLALELNH FLVSEKNFQE LEDEGYSGDE WEDRKRRIRK VFLIRRMQLA
1101: KHFIQTNVEP EWMVLCLLPV LPPELRPIVY RSGDKVVTSD INELYKRVIR RNNNLAYLLK RSELAPADLV MCQEKLVQEA VDTLLDSGSR GQPTRDGHNK
1201: VYKSLSDVIE GKEGRFRETL LGKRVDYSGR SVIVVGPSLS LHQCGLPLEI AIKLFQLFVI RDLITKRATS NVRIAKRKIW EKEPIVWEIL QEVMRGHPVL
1301: LNRAPTLHRL GIQAFQPTLV EGRTICLHPL VCKGFNADFD GDQMAVHLPL SLEAQAEARL LMFSHMNLLS PAIGDPICVP TQDMLIGLYV LTIGNRLGAR
1401: GNASQVHQLV GMRGLMADPQ GQMIDLPIQS NLREGLSLTE YIISCYGARK GVVDTAVRTA DAGYLTRRLV EVVQHIIVRR RDCGTIQESE QVIAEIRAGT
1501: STLHFKEKDQ DQMNTYSFSV DGRYIFDFSM ANDQVSHRLL DTFGKKDREI LDYLTPDRIV FNGHWNCFYP SILQDNSDLL AKKRRNRLVV PLQYHQEQEK
1601: ERISCLGISM EIPFMGVLRR NTIFAYFDDP RYRKDKRGSG IVKFRYRTLE EEYRTQEEEY RTREEEYRTR EEDSEDEYES PENKYRTREG EGEYKILEDE
1701: YRTLEDEYET LEDEYGILED EYRTLEKDSE EEYGSLENKY RTREGEGEYE ILEEESEEEY GSSEDGSEKE YGTLEEDSEE DSEEDSEDEY GSPEEDSILK
1801: KEGFIEHRGT KEFSLKYQKE VDRFFFILQE LHILPRSSSL KELIMNPLIA AASVIAAGLA VGLASIGPGV GQGTAAGQAV EGIARQPEAE GELVEFAEGT
1901: RGIALNLESK NVGIVLMGDG LMIQEGSFVK ATGRIAQIPV SEAYLGRVIN ALAKPIDGRG EIVASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI
2001: GRGQRELIIG DRQTGKTAVA TDTILNQKGQ DVICVYVAIG QRASSVAQVV TTFHEEGAME YTIVVAEMAD SPATLQYLAP YTGAALAEYF MYRERHTLII
2101: YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE RAAKLNSLLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV
2201: GISVSRVGSA AQIKAMKQVA GKSKLELAQF AELQAFAQFA SALDKTSQNQ LARGRRLREL LKQSQSNPLP VEEQVATIYT GTRGYLDSLE IEQVKKFLDE
2301: LRKHLKDTKP QFQEIISSSK TFTEQAETLL KEAIQEQLER FSLQEQT
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Arabidopsis Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.