Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12656 | Canola | cytosol | 36.03 | 35.9 |
| AT2G21850.1 | Thale cress | cytosol | 37.79 | 27.32 |
| AT2G21840.1 | Thale cress | nucleus | 36.03 | 26.66 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816719 | ProteinID:AAD20402.2 | ProteinID:AEC07227.1 | ArrayExpress:AT2G21830 | EnsemblPlantsGene:AT2G21830 |
| RefSeq:AT2G21830 | TAIR:AT2G21830 | RefSeq:AT2G21830-TAIR-G | EnsemblPlants:AT2G21830.1 | TAIR:AT2G21830.1 | EMBL:AY059865 |
| Unigene:At.26605 | EMBL:BT003365 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0035556 | GO:GO:0046872 | InterPro:IPR002219 | RefSeq:NP_565519.1 | InterPro:PE/DAG-bd | PFAM:PF03107 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50081 |
| UniProt:Q9SJ16 | SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI000000BFD7 | InterPro:Znf_PHD |
| SEG:seg | : | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SJ16]
Coordinates
chr2:+:9303713..9306025
Molecular Weight (calculated)
65593.4 Da
IEP (calculated)
7.184
GRAVY (calculated)
-0.230
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLEHFSHS CPLTSPEIVA EGICNICFQD QVVEYACKPC NFDICKTCSK LPQKVSHGFH SDHPLEFSLF QYDRKPGYIV CSCCGNMSSC SFYECKECEI
101: YLDLGCALLK NVFTGWDVRE MLHYSHEHLL RRCKPGQDAR GSCLLCELPL SPSSICYGCV YCYSFLHERC LDLPTEIRHP VHLEHPLRRL DYIRSGGRTF
201: CGACREKIDS VPFGCLECGF YIHMRCADSF LRCLMHESHE HKLFYVSSNA KEHFGRNNCC QICLGAVVSS LDSYYHCIEC ELEFHFECLG ISKTISKRSC
301: HIHPLVCKRV REEDDSLEYC GVCETLIHAG HHVYSCEECD FLGHIECILR EKEPSPLYLK DLYSCVEDVK RATNQEDYET NKVMVHDINH NHVVTSIDMC
401: ELEGKEHCHI CEKEILGNPW KCETCNFVTH NFCVELGKPS RHRFHWNHLL TLMPKPVATD MTSCKSCRED IKGFNLFCRI CNFIIHVSCA MKGKRFLGMT
501: GPKVVGTWRG RCLGGKHRMV QVMFPRSYQK VCIICHERVL GKAVSCMECE TIYHLRCIDR HRIKDRDSS
101: YLDLGCALLK NVFTGWDVRE MLHYSHEHLL RRCKPGQDAR GSCLLCELPL SPSSICYGCV YCYSFLHERC LDLPTEIRHP VHLEHPLRRL DYIRSGGRTF
201: CGACREKIDS VPFGCLECGF YIHMRCADSF LRCLMHESHE HKLFYVSSNA KEHFGRNNCC QICLGAVVSS LDSYYHCIEC ELEFHFECLG ISKTISKRSC
301: HIHPLVCKRV REEDDSLEYC GVCETLIHAG HHVYSCEECD FLGHIECILR EKEPSPLYLK DLYSCVEDVK RATNQEDYET NKVMVHDINH NHVVTSIDMC
401: ELEGKEHCHI CEKEILGNPW KCETCNFVTH NFCVELGKPS RHRFHWNHLL TLMPKPVATD MTSCKSCRED IKGFNLFCRI CNFIIHVSCA MKGKRFLGMT
501: GPKVVGTWRG RCLGGKHRMV QVMFPRSYQK VCIICHERVL GKAVSCMECE TIYHLRCIDR HRIKDRDSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.