Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G21840.1 | Thale cress | nucleus | 51.97 | 53.19 |
| Bra033990.1-P | Field mustard | cytosol | 46.0 | 46.77 |
| AT2G21830.1 | Thale cress | cytosol | 27.32 | 37.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816721 | ProteinID:AEC07229.1 | ArrayExpress:AT2G21850 | EnsemblPlantsGene:AT2G21850 | RefSeq:AT2G21850 |
| TAIR:AT2G21850 | RefSeq:AT2G21850-TAIR-G | EnsemblPlants:AT2G21850.1 | TAIR:AT2G21850.1 | Unigene:At.63479 | InterPro:DC1 |
| UniProt:F4III1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0035556 | GO:GO:0046872 | InterPro:IPR002219 | RefSeq:NP_179776.2 | InterPro:PE/DAG-bd | PFAM:PF03107 |
| PO:PO:0000256 | PO:PO:0000262 | PO:PO:0000293 | PO:PO:0004507 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0020100 | ScanProsite:PS01359 | PFscan:PS50081 | SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 |
| UniParc:UPI00005DC2BA | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | SEG:seg | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4III1]
Coordinates
chr2:+:9315204..9318238
Molecular Weight (calculated)
90071.0 Da
IEP (calculated)
7.263
GRAVY (calculated)
-0.140
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELKHFSHE CPLTSPKIAV DGICSICYKD DLVELACSPC DFSLCKGCSQ LPQKVWHDFH PDHPLEFCLH QYDQKPEHVV CSGCGNMTSG SFYKCKECEI
101: YLDMGCALIA SIFRGWDSKD LLHYSHCHLL KRCRPGPDAR GSCLLCELPL SPSSVCYGCV HCYSFVHERC IHFPREIAHP VHLAHPLKRL DYTRTSLCHI
201: CGESIAGVPF GCLECDFDAH LRCLDSFLRG LMHKSHPHRL IYRTKSHISF TENDQCQICR RSIVISLDSF FYCIQCSMVF HFECLEIPEF VVEKSHHIHP
301: LVCKFLPYED EFLEYCGVCE TMVYAGHHAY SCDECDFLGH IECILRKAAP SPLYLKDLYP CSKDNTSSTY QLDHDTNEPK AELMVNTMKG HIHVMRFVDF
401: RELDEKAKCN ICRTKIRGSP CKCETCSFQA HSFCAELGRP LKHRVHKHFL TLLPDAPAGT DVTMNCDICR DDIKGFNLFC RICNFVIHTN CIFRGKHLFT
501: ESQRGQKIIG SCTAMSGCIQ KEHLLDQIMV SKSYSMACDI CEEVVCGKDK TIHMSSLRLS TFVYRLINES SLVSCVVCKD VYHPLCLEVN RQMRFCHPIH
601: PDHYLPLSFV SGSKCLACKL EIKKYGYHCS TCNISFHIKC SKAVIFPQQT SHNHRFYHFW IADSKITRTC RVCAKPCGVS FYGCIGCDFN AHAECIAFPD
701: NVKNQKHEHT LKLIGSRYFE PDCFLCGERI VGKFGKSSNV LYSCKHCGKE FHLKCIMSTD DREAATEEDQ YGDIYLMYLE RHLLEVL
101: YLDMGCALIA SIFRGWDSKD LLHYSHCHLL KRCRPGPDAR GSCLLCELPL SPSSVCYGCV HCYSFVHERC IHFPREIAHP VHLAHPLKRL DYTRTSLCHI
201: CGESIAGVPF GCLECDFDAH LRCLDSFLRG LMHKSHPHRL IYRTKSHISF TENDQCQICR RSIVISLDSF FYCIQCSMVF HFECLEIPEF VVEKSHHIHP
301: LVCKFLPYED EFLEYCGVCE TMVYAGHHAY SCDECDFLGH IECILRKAAP SPLYLKDLYP CSKDNTSSTY QLDHDTNEPK AELMVNTMKG HIHVMRFVDF
401: RELDEKAKCN ICRTKIRGSP CKCETCSFQA HSFCAELGRP LKHRVHKHFL TLLPDAPAGT DVTMNCDICR DDIKGFNLFC RICNFVIHTN CIFRGKHLFT
501: ESQRGQKIIG SCTAMSGCIQ KEHLLDQIMV SKSYSMACDI CEEVVCGKDK TIHMSSLRLS TFVYRLINES SLVSCVVCKD VYHPLCLEVN RQMRFCHPIH
601: PDHYLPLSFV SGSKCLACKL EIKKYGYHCS TCNISFHIKC SKAVIFPQQT SHNHRFYHFW IADSKITRTC RVCAKPCGVS FYGCIGCDFN AHAECIAFPD
701: NVKNQKHEHT LKLIGSRYFE PDCFLCGERI VGKFGKSSNV LYSCKHCGKE FHLKCIMSTD DREAATEEDQ YGDIYLMYLE RHLLEVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.