Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G21850.1 | Thale cress | cytosol | 53.19 | 51.97 |
| Bra033990.1-P | Field mustard | cytosol | 48.63 | 48.32 |
| AT2G21830.1 | Thale cress | cytosol | 26.66 | 36.03 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816720 | ProteinID:AEC07228.1 | EMBL:AK229095 | ArrayExpress:AT2G21840 | EnsemblPlantsGene:AT2G21840 |
| RefSeq:AT2G21840 | TAIR:AT2G21840 | RefSeq:AT2G21840-TAIR-G | EnsemblPlants:AT2G21840.1 | TAIR:AT2G21840.1 | InterPro:DC1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | GO:GO:0046872 | InterPro:IPR002219 |
| RefSeq:NP_179775.2 | InterPro:PE/DAG-bd | PFAM:PF03107 | ScanProsite:PS01359 | PFscan:PS50081 | UniProt:Q0WPH4 |
| SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI0000DB538C | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q0WPH4]
Coordinates
chr2:-:9307024..9310358
Molecular Weight (calculated)
88953.3 Da
IEP (calculated)
7.224
GRAVY (calculated)
-0.321
Length
769 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLQHGSHE CELTSRGIVA NGICNICFKD EPVEFACDPC NFDLCKACSD LPQKMSHHLH PEHPLEFRIG EDDQKTKHMV CVVCGNMSSG AKYYYECSKC
101: EIYLDLGCAL QKNIATSWEA KEMLHYSHEH LLKRCRPGPD SKDSCLLCEQ PLSFTAICYG CVHCYLFFHE RCLDLPTEIQ HPVHPMHPLK RLNYIQTFDG
201: EKSCNACHGQ FVGVPFGCLG CGFYLHLRCA DALLRGLLYK SHEHRLFYVE STRRVADERV KQPCLICKET VVYDRFYYLC VECDLKCHTK CLEIPEYVIK
301: KSYHIHKLRF IRVGGEDDFL EYCGVCETMV ISRYPEYSCE ECDFVGHTEC ILREEVPSPM YLKDLYSCSK GNTKSQHLET IEFEDRLLVN SFSHIHVMKL
401: IHMSELEEEG KCNMCGTKIH DNPCKCETCS FQSHDFCAEL GRPSKHQFHL NHSLTLLPNT PRWFRRKCES CKDDIGGFNL FCRICNFIID INCALKDKKM
501: HGALQRGQKI IGTWLGLCIQ DKHSLFQVIV SRSYPITCSI CDEKFCGKAF SCVTCEDIYH PMCIQVGRRI LVGHPLHVDH MLAISLKSGS KCTACQLNIT
601: KYGYHCTICE INFHIECIKA VIVPRKIKSH SHYFYNFWNN DSRVTRACGV CSRPCGVSFY GCIDCMFNAH VECIGFPANV RNQRHVHTLT QVYTSHREKW
701: SVRDNYMDRI SYKCYPCDRN FPTERIMSKD DRRETTEEKQ QKDIYLMHLE RDLIDLLVRT DDDACGQSQ
101: EIYLDLGCAL QKNIATSWEA KEMLHYSHEH LLKRCRPGPD SKDSCLLCEQ PLSFTAICYG CVHCYLFFHE RCLDLPTEIQ HPVHPMHPLK RLNYIQTFDG
201: EKSCNACHGQ FVGVPFGCLG CGFYLHLRCA DALLRGLLYK SHEHRLFYVE STRRVADERV KQPCLICKET VVYDRFYYLC VECDLKCHTK CLEIPEYVIK
301: KSYHIHKLRF IRVGGEDDFL EYCGVCETMV ISRYPEYSCE ECDFVGHTEC ILREEVPSPM YLKDLYSCSK GNTKSQHLET IEFEDRLLVN SFSHIHVMKL
401: IHMSELEEEG KCNMCGTKIH DNPCKCETCS FQSHDFCAEL GRPSKHQFHL NHSLTLLPNT PRWFRRKCES CKDDIGGFNL FCRICNFIID INCALKDKKM
501: HGALQRGQKI IGTWLGLCIQ DKHSLFQVIV SRSYPITCSI CDEKFCGKAF SCVTCEDIYH PMCIQVGRRI LVGHPLHVDH MLAISLKSGS KCTACQLNIT
601: KYGYHCTICE INFHIECIKA VIVPRKIKSH SHYFYNFWNN DSRVTRACGV CSRPCGVSFY GCIDCMFNAH VECIGFPANV RNQRHVHTLT QVYTSHREKW
701: SVRDNYMDRI SYKCYPCDRN FPTERIMSKD DRRETTEEKQ QKDIYLMHLE RDLIDLLVRT DDDACGQSQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.