Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010926 | Potato | cytosol | 52.61 | 65.94 |
| AT3G03940.1 | Thale cress | cytosol, plastid | 72.47 | 29.67 |
| AT5G18190.2 | Thale cress | cytosol | 68.29 | 28.36 |
| AT2G25760.2 | Thale cress | cytosol | 62.72 | 26.63 |
| AT3G13670.1 | Thale cress | cytosol | 64.81 | 26.46 |
| AT4G28540.1 | Thale cress | cytosol | 17.77 | 10.65 |
| AT3G23340.1 | Thale cress | cytosol | 12.89 | 8.37 |
| AT5G43320.1 | Thale cress | cytosol | 13.59 | 8.12 |
| AT1G04440.1 | Thale cress | cytosol | 12.89 | 7.91 |
| AT4G14340.1 | Thale cress | cytosol | 12.54 | 7.88 |
| AT1G03930.1 | Thale cress | cytosol | 12.2 | 7.43 |
| AT5G44100.1 | Thale cress | cytosol | 11.85 | 7.14 |
| AT2G19470.1 | Thale cress | cytosol | 10.45 | 6.93 |
| AT1G72710.1 | Thale cress | cytosol | 10.8 | 6.67 |
| AT4G26100.1 | Thale cress | cytosol | 10.1 | 6.44 |
| AT4G28860.1 | Thale cress | cytosol | 9.06 | 6.28 |
| AT5G57015.1 | Thale cress | cytosol | 8.71 | 5.75 |
| AT4G28880.1 | Thale cress | cytosol | 8.01 | 5.54 |
| AT4G08800.1 | Thale cress | cytosol | 3.48 | 3.51 |
Protein Annotations
| MapMan:12.3.6.2 | MapMan:18.4.4.2 | EntrezGene:820302 | ProteinID:AAF00625.1 | ProteinID:AAF05852.1 | ProteinID:AEE74013.1 |
| ArrayExpress:AT3G03930 | EnsemblPlantsGene:AT3G03930 | RefSeq:AT3G03930 | TAIR:AT3G03930 | RefSeq:AT3G03930-TAIR-G | EnsemblPlants:AT3G03930.1 |
| TAIR:AT3G03930.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 | RefSeq:NP_187043.1 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11909 | PANTHER:PTHR11909:SF131 | UniProt:Q9S828 | UniParc:UPI000009CD48 |
Description
F20H23.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S828]
Coordinates
chr3:-:1011310..1012810
Molecular Weight (calculated)
32395.6 Da
IEP (calculated)
9.721
GRAVY (calculated)
-0.499
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPISSGRI GDGGLDSCPE KKEEEKDSTS RLCSDLSDLR IERIGSTPAF QWISVYTKRP PMKQRFHHNI ANSRLSHHAE KGKRDGLFIS CVASEANLWA
101: LVMDAGTGFT SQVYKFSSTF LPKDWIMKQW EKNYYISSIA GANNGSSLVV MSKGTRYIQQ SYKTGDSIPL KWMDKKWKEG FHVTSMTTGG SRWGVVMSRN
201: SGFSEQVMEV DFLNPSEDIN RRLESGYMIT SMAATADQAA LILSIPRRKI TDEIQETLRT SSFPSSYVKD KWGKNMFITS ICYGRTV
101: LVMDAGTGFT SQVYKFSSTF LPKDWIMKQW EKNYYISSIA GANNGSSLVV MSKGTRYIQQ SYKTGDSIPL KWMDKKWKEG FHVTSMTTGG SRWGVVMSRN
201: SGFSEQVMEV DFLNPSEDIN RRLESGYMIT SMAATADQAA LILSIPRRKI TDEIQETLRT SSFPSSYVKD KWGKNMFITS ICYGRTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.