Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013438.1-P | Field mustard | nucleus | 73.08 | 73.79 |
| CDX78968 | Canola | nucleus | 73.08 | 73.79 |
| CDY31462 | Canola | nucleus | 70.19 | 73.0 |
| CDY26409 | Canola | mitochondrion | 31.73 | 55.46 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827745 | UniProt:A0A178UTR1 | ProteinID:AEE84258.1 | EMBL:AK117312 | ArrayExpress:AT4G20000 |
| EnsemblPlantsGene:AT4G20000 | RefSeq:AT4G20000 | TAIR:AT4G20000 | RefSeq:AT4G20000-TAIR-G | EnsemblPlants:AT4G20000.1 | TAIR:AT4G20000.1 |
| EMBL:BT005227 | ProteinID:CAA16608.1 | ProteinID:CAB79000.1 | GO:GO:0008150 | RefSeq:NP_193733.1 | UniProt:O49427 |
| ProteinID:OAO96900.1 | PFAM:PF05678 | PO:PO:0000293 | PO:PO:0009005 | PANTHER:PTHR33179 | PANTHER:PTHR33179:SF1 |
| UniParc:UPI000000C593 | InterPro:VQ | SEG:seg | : | : | : |
Description
At4g20000 [Source:UniProtKB/TrEMBL;Acc:O49427]
Coordinates
chr4:+:10838310..10839335
Molecular Weight (calculated)
23253.4 Da
IEP (calculated)
4.798
GRAVY (calculated)
-0.873
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSREDQWL QHYEQQNIQE ITPCFNAINI ASSSGSSLGD GGAAAHEAAG RRSRASRRAI PTTLLNANPS NFRALVQKFT GRSAGGESNR RKGPVTLDFG
101: SPTTISKEAI FPVSSDRSNN NLDHVVNQHV SNEQRHVTWS GTESMMSYQL GEETNSAVYS SGYDDQDLPR EYSGNSSYDE SLDHMDYYQD FHRETATLEE
201: FMMRDLDL
101: SPTTISKEAI FPVSSDRSNN NLDHVVNQHV SNEQRHVTWS GTESMMSYQL GEETNSAVYS SGYDDQDLPR EYSGNSSYDE SLDHMDYYQD FHRETATLEE
201: FMMRDLDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.