Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013438.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY31462 | Canola | nucleus | 75.24 | 77.5 |
| AT4G20000.1 | Thale cress | nucleus | 73.79 | 73.08 |
| CDY26409 | Canola | mitochondrion | 32.04 | 55.46 |
Protein Annotations
| EnsemblPlants:CDX78968 | EnsemblPlantsGene:GSBRNA2T00131477001 | InterPro:VQ | PANTHER:PTHR33179 | PANTHER:PTHR33179:SF1 | PFAM:PF05678 |
| ProteinID:CDX78968 | ProteinID:CDX78968.1 | SEG:seg | UniParc:UPI000254682A | MapMan:35.2 | : |
Description
BnaA01g10350D
Coordinates
chrLK031816:+:1129903..1130523
Molecular Weight (calculated)
23155.4 Da
IEP (calculated)
5.473
GRAVY (calculated)
-0.854
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNSSRAGQ WLQHYEPHQV QELSPCFNGI NMMPSSLGDG GGIVEAHETS GRRSRASRRA VPTTLLNANP SNFRALVQKF TGRSSGGESN RRRGPVTLDF
101: GSPTTISKEA IFPVSGDRKS YGHDHVLNQH VNNERHVTWS GTEATTTYQL GEESNSVFDQ QDHDLLREYS VNSSYDDGLD HVDYYYHDFH QATETLEEFM
201: MSDLDL
101: GSPTTISKEA IFPVSGDRKS YGHDHVLNQH VNNERHVTWS GTEATTTYQL GEESNSVFDQ QDHDLLREYS VNSSYDDGLD HVDYYYHDFH QATETLEEFM
201: MSDLDL
001: MNNSREDQWL QHYEQQNIQE ITPCFNAINI ASSSGSSLGD GGAAAHEAAG RRSRASRRAI PTTLLNANPS NFRALVQKFT GRSAGGESNR RKGPVTLDFG
101: SPTTISKEAI FPVSSDRSNN NLDHVVNQHV SNEQRHVTWS GTESMMSYQL GEETNSAVYS SGYDDQDLPR EYSGNSSYDE SLDHMDYYQD FHRETATLEE
201: FMMRDLDL
101: SPTTISKEAI FPVSSDRSNN NLDHVVNQHV SNEQRHVTWS GTESMMSYQL GEETNSAVYS SGYDDQDLPR EYSGNSSYDE SLDHMDYYQD FHRETATLEE
201: FMMRDLDL
Arabidopsis Description
At4g20000 [Source:UniProtKB/TrEMBL;Acc:O49427]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.