Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78968 | Canola | nucleus | 77.5 | 75.24 |
| AT4G20000.1 | Thale cress | nucleus | 73.0 | 70.19 |
| CDY26409 | Canola | mitochondrion | 34.5 | 57.98 |
Protein Annotations
| EnsemblPlants:CDY31462 | EnsemblPlantsGene:GSBRNA2T00047724001 | InterPro:VQ | PANTHER:PTHR33179 | PANTHER:PTHR33179:SF1 | PFAM:PF05678 |
| ProteinID:CDY31462 | ProteinID:CDY31462.1 | UniParc:UPI0004EF0C70 | UniProt:A0A078H1U5 | MapMan:35.2 | : |
Description
BnaC03g63620DBnaC03g63620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1U5]
Coordinates
chrLK032272:-:403136..403738
Molecular Weight (calculated)
22930.4 Da
IEP (calculated)
6.115
GRAVY (calculated)
-0.895
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNSSRAGQ WLQHYEPHQV QEITPCFNAI SMMSPSAAHE TARKRSRAPR RAIPTTLLNA NPSNFRALVQ KFTGRSAGGE SNRRKGPVTL DFRSPTTLSK
101: EGIFPVSGDR NNYDEDHHHA LNRHVSREQR HVTWSGEEPT TLYQLGEESS SMFDQDHDLF GEYSGISSYD EGLDHMDYCY HDFYLQTATL EEFMMRDLDL
101: EGIFPVSGDR NNYDEDHHHA LNRHVSREQR HVTWSGEEPT TLYQLGEESS SMFDQDHDLF GEYSGISSYD EGLDHMDYCY HDFYLQTATL EEFMMRDLDL
001: MNNSREDQWL QHYEQQNIQE ITPCFNAINI ASSSGSSLGD GGAAAHEAAG RRSRASRRAI PTTLLNANPS NFRALVQKFT GRSAGGESNR RKGPVTLDFG
101: SPTTISKEAI FPVSSDRSNN NLDHVVNQHV SNEQRHVTWS GTESMMSYQL GEETNSAVYS SGYDDQDLPR EYSGNSSYDE SLDHMDYYQD FHRETATLEE
201: FMMRDLDL
101: SPTTISKEAI FPVSSDRSNN NLDHVVNQHV SNEQRHVTWS GTESMMSYQL GEETNSAVYS SGYDDQDLPR EYSGNSSYDE SLDHMDYYQD FHRETATLEE
201: FMMRDLDL
Arabidopsis Description
At4g20000 [Source:UniProtKB/TrEMBL;Acc:O49427]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.