Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G25980.2 | Thale cress | endoplasmic reticulum, vacuole | 66.06 | 53.02 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 61.73 | 50.09 |
| AT1G47600.1 | Thale cress | endoplasmic reticulum, vacuole | 44.87 | 38.55 |
| AT1G51490.1 | Thale cress | mitochondrion | 30.98 | 33.01 |
Protein Annotations
| Gene3D:3.20.20.80 | EntrezGene:834891 | MapMan:9.5.2.1 | ProteinID:AED95661.1 | EMBL:AP000372 | ArrayExpress:AT5G48375 |
| EnsemblPlantsGene:AT5G48375 | RefSeq:AT5G48375 | TAIR:AT5G48375 | RefSeq:AT5G48375-TAIR-G | EnsemblPlants:AT5G48375.1 | TAIR:AT5G48375.1 |
| Unigene:At.55430 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008422 | GO:GO:0009056 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0019137 |
| GO:GO:0019748 | GO:GO:0019762 | GO:GO:0102799 | InterPro:Glyco_hydro_1 | InterPro:Glycoside_hydrolase_SF | RefSeq:NP_680406.1 |
| PFAM:PF00232 | PO:PO:0000293 | PO:PO:0009029 | PO:PO:0009032 | PRINTS:PR00131 | PANTHER:PTHR10353 |
| PANTHER:PTHR10353:SF44 | UniProt:Q3E8E5 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | Symbol:TGG3 | UniParc:UPI0000162840 |
Description
TGG3Putative myrosinase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q3E8E5]
Coordinates
chr5:-:19601303..19603883
Molecular Weight (calculated)
50760.4 Da
IEP (calculated)
8.046
GRAVY (calculated)
-0.449
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFRALGLVL LLAVETCKAE EITCEETKPF TCNQTDRFNR KHFDDDFIFE GGKGRGLNVW DGFTHRYPEK GGPDLGNGDS TCGSYEHWQK DIDVMTELGV
101: DGYRFSLAWS RIAPRESNQA GVKYYNDLID GLLAKNITPF VTLFHWDLPQ VLQDEYEGFL NHEIIDDFKD YANLCFKIFG DRVKKWITIN QLYTVPTRGY
201: AMGTDAPEPY IVAHNQLLAH AKVVHLYRKK YKPKQRGQIG VVMITRWFVP YDSTQANIDA TERNKEFFLG WFMEPLTKGK YPDIMRKLVG RRLPKFNKKE
301: AKLVKGSYDF LGINYYQTQY VYAIPANPPN RLTVLNDSLS AFSYENKDGP IGPWFNADSY YHPRGILNVL EHFKTKYGNP LVYITENGEL LILSGCNVKG
401: YFAWCLGDNY ELWPSRSFHV SPFYLLHRKD KGAFPSFEA
101: DGYRFSLAWS RIAPRESNQA GVKYYNDLID GLLAKNITPF VTLFHWDLPQ VLQDEYEGFL NHEIIDDFKD YANLCFKIFG DRVKKWITIN QLYTVPTRGY
201: AMGTDAPEPY IVAHNQLLAH AKVVHLYRKK YKPKQRGQIG VVMITRWFVP YDSTQANIDA TERNKEFFLG WFMEPLTKGK YPDIMRKLVG RRLPKFNKKE
301: AKLVKGSYDF LGINYYQTQY VYAIPANPPN RLTVLNDSLS AFSYENKDGP IGPWFNADSY YHPRGILNVL EHFKTKYGNP LVYITENGEL LILSGCNVKG
401: YFAWCLGDNY ELWPSRSFHV SPFYLLHRKD KGAFPSFEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.