Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000260.1-P | Field mustard | plastid | 2.8 | 1.02 |
| Bra016871.1-P | Field mustard | plastid | 2.45 | 0.89 |
| Bra014912.1-P | Field mustard | cytosol | 0.35 | 0.84 |
| Bra034523.1-P | Field mustard | extracellular, vacuole | 0.7 | 0.28 |
| Bra018469.1-P | Field mustard | extracellular, plasma membrane | 0.7 | 0.27 |
| Bra038431.1-P | Field mustard | cytosol | 0.35 | 0.27 |
| Bra036916.1-P | Field mustard | extracellular, golgi | 0.0 | 0.0 |
| Bra038432.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra000259.1 | EnsemblPlants:Bra000259.1-P | EnsemblPlantsGene:Bra000259 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI00025403BB |
| UniProt:M4C7T1 | MapMan:35.1 | : | : | : | : |
Description
AT2G42460 (E=3e-067) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein
Coordinates
chrA03:-:10215031..10216365
Molecular Weight (calculated)
32361.0 Da
IEP (calculated)
7.927
GRAVY (calculated)
-0.242
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKAFRWEIN NFSENKSVMK SDRFSSGGCE WYLCVYPKGK IVDDHLSLFL NVVNFRKLLP GWKRQASFSF VVLNQSGKEL HRTVEKSRLF CAEAPSWGYS
101: KILPLTKLQE DGFLENNKLT IEVNIKVTKV AHEGKSTENE IVVVHGFHVL NSQVVSMHNM FVKHPDVAVD IRSDIREVKT AYMNILLGLV QTLAKPPQSL
201: SETELSNADS ELSELTDAGF KLDWLKSKLE EVSLKRKEPS SHLKVELDKE KIESATAAPA PAPRVSPFEC IDVLIKKFFL ACFSGQ
101: KILPLTKLQE DGFLENNKLT IEVNIKVTKV AHEGKSTENE IVVVHGFHVL NSQVVSMHNM FVKHPDVAVD IRSDIREVKT AYMNILLGLV QTLAKPPQSL
201: SETELSNADS ELSELTDAGF KLDWLKSKLE EVSLKRKEPS SHLKVELDKE KIESATAAPA PAPRVSPFEC IDVLIKKFFL ACFSGQ
001: MMEIDLQKTF TWKIENFSGR KFPITSTVFS SGGCECYVLI RPKGDGFEDY LSLYLCVGNP KSLQPGWKRR ASLHFIVLNQ SGKEVHRTSE RYGLFGPEIP
101: GWGFRTALPL TKLQDRELLE NNTLFIEVYI KVTEVVHEGD ETRKDMLDFK GFNVLSSQIA SVSPIFAKYP KFADDIKPTS KAVKTVYLKI LLGLIKTVNK
201: PPEIFSETEL IKAYSSLIDL MEVGFRVKWL KSKLDEISLA RKKKVDADAA RVQELEGKVK NQVELDKEKT KSHVEPKMLS FKDYASPVSP WIPRRKRSD
101: GWGFRTALPL TKLQDRELLE NNTLFIEVYI KVTEVVHEGD ETRKDMLDFK GFNVLSSQIA SVSPIFAKYP KFADDIKPTS KAVKTVYLKI LLGLIKTVNK
201: PPEIFSETEL IKAYSSLIDL MEVGFRVKWL KSKLDEISLA RKKKVDADAA RVQELEGKVK NQVELDKEKT KSHVEPKMLS FKDYASPVSP WIPRRKRSD
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At2g42460 [Source:UniProtKB/Swiss-Prot;Acc:F4IN32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.