Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014140.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G37480.1 | Bra014140.1-P | AT1G48480.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74957 | Canola | nucleus | 96.7 | 96.7 |
| Bra017183.1-P | Field mustard | nucleus | 76.92 | 74.07 |
| Bra000003.1-P | Field mustard | nucleus | 73.63 | 70.9 |
| AT2G37480.1 | Thale cress | nucleus | 73.63 | 69.07 |
| Bra007019.1-P | Field mustard | nucleus | 61.54 | 55.45 |
| Bra003152.1-P | Field mustard | nucleus | 56.59 | 51.76 |
Protein Annotations
Description
AT2G37480 (E=9e-043) | unknown protein
Coordinates
chrA05:-:3908117..3908735
Molecular Weight (calculated)
19684.5 Da
IEP (calculated)
8.696
GRAVY (calculated)
-1.154
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVSGKDSD FEILPSSSPT QCSDGSEDSL EPDGDETGYI NQTVNGESDT KSSLGSLPLK CSDDEDKDEN LTTAPVVVLI PAIKGSREKH GLTLRKTSVS
101: WADDVYDPPP SIASHTRNKK QQQQKSKSKD SHRKNGKKGQ KGKDSSSSSR SGKDNKKQAS RGKHSRDKFD WVTQMPIVAA SS
101: WADDVYDPPP SIASHTRNKK QQQQKSKSKD SHRKNGKKGQ KGKDSSSSSR SGKDNKKQAS RGKHSRDKFD WVTQMPIVAA SS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTTPIVL IPAIKGSREK
101: YGLSLRKSSV SWGADVYDPP PSIASHTVTR SKKQQQKSKS KDNHRKTGKK GQKSKDNSSS RGGSSKDKKQ ASRKHSRDKF DWVTQMPIVA ASS
101: YGLSLRKSSV SWGADVYDPP PSIASHTVTR SKKQQQKSKS KDNHRKTGKK GQKSKDNSSS RGGSSKDKKQ ASRKHSRDKF DWVTQMPIVA ASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.