Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000740.1-P | |
| Bra035240.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53670.1 | Bra000740.1-P | AT4G11240.1 | 21798944 |
| AT3G53670.1 | Bra035240.1-P | AT4G11240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78195 | Canola | nucleus | 99.01 | 97.56 |
| CDX73534 | Canola | nucleus | 96.53 | 91.98 |
| Bra003152.1-P | Field mustard | nucleus | 70.3 | 71.36 |
| AT3G53670.1 | Thale cress | nucleus | 69.8 | 69.46 |
| Bra017183.1-P | Field mustard | nucleus | 57.92 | 61.9 |
| Bra005191.1-P | Field mustard | nucleus | 55.45 | 61.54 |
| Bra000003.1-P | Field mustard | nucleus | 57.43 | 61.38 |
Protein Annotations
Description
AT3G53670 (E=4e-044) | unknown protein
Coordinates
chrA09:+:26855212..26856371
Molecular Weight (calculated)
21525.5 Da
IEP (calculated)
8.685
GRAVY (calculated)
-1.007
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGGLDY KDAESHISAS SPNKCSNNGS NHVSVTGSED AQESDGDDSG NIHQYLNEES KDITTEPLLP LKSSDDEVED KNLAKDMLSE SVSAAIVIPA
101: IKGSREKHGK SVEKLSVSWA EDVYDPPPSI VSHTRSKKQQ QHQKSKSSLK KSGKKGHKGS SSSSSSRGSK DKKSSSSSSS RSKHSRDKFG WATQMPIAAA
201: SS
101: IKGSREKHGK SVEKLSVSWA EDVYDPPPSI VSHTRSKKQQ QHQKSKSSLK KSGKKGHKGS SSSSSSRGSK DKKSSSSSSS RSKHSRDKFG WATQMPIAAA
201: SS
001: MSSVCGGLDF KDAESSSASS PIICSTGVKH ISCVGSDDAQ ESDGDDSGYI HQTVIEESKD KAISEPIPES LPLNSLDDES EDKNLATALQ DMFSESMSVV
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
Arabidopsis Description
Uncharacterized protein At3g53670; F4P12.370 [Source:UniProtKB/TrEMBL;Acc:Q9LFF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.