Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53670.1 | CDX86799 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDX90793 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY05136 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY13242 | AT4G11240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007019.1-P | Field mustard | nucleus | 97.56 | 99.01 |
| CDX73534 | Canola | nucleus | 97.07 | 93.87 |
| CDY52744 | Canola | nucleus | 73.17 | 76.53 |
| CDY07572 | Canola | nucleus | 72.2 | 75.13 |
| AT3G53670.1 | Thale cress | nucleus | 68.78 | 69.46 |
| CDX79736 | Canola | nucleus | 57.56 | 63.44 |
| CDY07787 | Canola | nucleus | 57.07 | 62.23 |
| CDX93375 | Canola | nucleus | 56.1 | 61.5 |
| CDX74957 | Canola | nucleus | 54.15 | 60.99 |
| CDY18441 | Canola | nucleus | 55.61 | 60.64 |
| CDX91366 | Canola | nucleus | 55.12 | 60.11 |
Protein Annotations
| EnsemblPlants:CDX78195 | EnsemblPlantsGene:GSBRNA2T00129509001 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDX78195 | ProteinID:CDX78195.1 |
| SEG:seg | UniParc:UPI0004EE6D85 | MapMan:35.2 | : | : | : |
Description
BnaA09g33900D
Coordinates
chrLK031814:+:1667146..1668464
Molecular Weight (calculated)
21837.8 Da
IEP (calculated)
8.685
GRAVY (calculated)
-1.021
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGGLDY KDAESHISAS SPNKCSNNGS NHVSVTGSED AQESDGDDSG NIHQYLNEES KDITTEPLLP LKSSDDEVED KNLAKDMLSE SPQVSAAIVI
101: PAIKGSREKH GKSVEKLSVS WAEDVYDPPP SIVSHTRSKK QQQHQKSKSS LKKSGKKGHK GSSSSSSSSS SRGSKDKKSS SSSRSKHSRD KFGWATQMPI
201: AAASS
101: PAIKGSREKH GKSVEKLSVS WAEDVYDPPP SIVSHTRSKK QQQHQKSKSS LKKSGKKGHK GSSSSSSSSS SRGSKDKKSS SSSRSKHSRD KFGWATQMPI
201: AAASS
001: MSSVCGGLDF KDAESSSASS PIICSTGVKH ISCVGSDDAQ ESDGDDSGYI HQTVIEESKD KAISEPIPES LPLNSLDDES EDKNLATALQ DMFSESMSVV
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
Arabidopsis Description
Uncharacterized protein At3g53670; F4P12.370 [Source:UniProtKB/TrEMBL;Acc:Q9LFF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.