Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G37480.1 | CDX77309 | AT1G48480.1 | 15618630 |
| AT2G37480.1 | CDY41827 | AT1G48480.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000003.1-P | Field mustard | nucleus | 97.87 | 97.35 |
| CDX79736 | Canola | nucleus | 92.55 | 93.55 |
| CDX93375 | Canola | nucleus | 77.13 | 77.54 |
| CDY18441 | Canola | nucleus | 75.0 | 75.0 |
| AT2G37480.1 | Thale cress | nucleus | 77.13 | 74.74 |
| CDX74957 | Canola | nucleus | 70.21 | 72.53 |
| CDX91366 | Canola | nucleus | 71.81 | 71.81 |
| CDY52744 | Canola | nucleus | 60.11 | 57.65 |
| CDX78195 | Canola | nucleus | 62.23 | 57.07 |
| CDY07572 | Canola | nucleus | 59.57 | 56.85 |
| CDX73534 | Canola | nucleus | 60.64 | 53.77 |
Protein Annotations
| EnsemblPlants:CDY07787 | EnsemblPlantsGene:GSBRNA2T00124921001 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDY07787 | ProteinID:CDY07787.1 |
| SEG:seg | UniParc:UPI0004EE3AE9 | UniProt:A0A078F3X0 | MapMan:35.2 | : | : |
Description
BnaA03g17240DBnaA03g17240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3X0]
Coordinates
chrLK031980:-:955438..957164
Molecular Weight (calculated)
20570.5 Da
IEP (calculated)
8.487
GRAVY (calculated)
-1.204
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGTLDF KDADFDISTS SPPTQCCNGS KHSSHAGSEE SQESDGDETG YIHQTENEDS VTKDLGKSTL ESLPSDDENK DDNVNITPVV LIPAIKGSRE
101: KHGLSLKKSS VSWADDVYDP PPSIASHTRN KKQQQHKSKS KDNHKKKGKK GQKNSSSRSG KDKKQAARKH SREKFDWVTQ MPIVAASS
101: KHGLSLKKSS VSWADDVYDP PPSIASHTRN KKQQQHKSKS KDNHKKKGKK GQKNSSSRSG KDKKQAARKH SREKFDWVTQ MPIVAASS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTTPIVL IPAIKGSREK
101: YGLSLRKSSV SWGADVYDPP PSIASHTVTR SKKQQQKSKS KDNHRKTGKK GQKSKDNSSS RGGSSKDKKQ ASRKHSRDKF DWVTQMPIVA ASS
101: YGLSLRKSSV SWGADVYDPP PSIASHTVTR SKKQQQKSKS KDNHRKTGKK GQKSKDNSSS RGGSSKDKKQ ASRKHSRDKF DWVTQMPIVA ASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.