Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G37480.1 | CDX77309 | AT1G48480.1 | 15618630 |
| AT2G37480.1 | CDY41827 | AT1G48480.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18441 | Canola | nucleus | 94.65 | 94.15 |
| CDY07787 | Canola | nucleus | 77.54 | 77.13 |
| CDX91366 | Canola | nucleus | 77.01 | 76.6 |
| CDX74957 | Canola | nucleus | 73.26 | 75.27 |
| CDX79736 | Canola | nucleus | 74.33 | 74.73 |
| AT2G37480.1 | Thale cress | nucleus | 76.47 | 73.71 |
| CDX78195 | Canola | nucleus | 61.5 | 56.1 |
| CDY52744 | Canola | nucleus | 57.75 | 55.1 |
| CDY07572 | Canola | nucleus | 57.75 | 54.82 |
| CDX73534 | Canola | nucleus | 60.96 | 53.77 |
Protein Annotations
| EnsemblPlants:CDX93375 | EnsemblPlantsGene:GSBRNA2T00155360001 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDX93375 | ProteinID:CDX93375.1 |
| SEG:seg | UniParc:UPI0004EE4AC4 | MapMan:35.2 | : | : | : |
Description
BnaC04g45210D
Coordinates
chrLK031875:-:1367205..1368793
Molecular Weight (calculated)
20296.2 Da
IEP (calculated)
8.096
GRAVY (calculated)
-1.145
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGKLDF KGADFEISAS SPTQCSNGSK LSSHAGSDES QESDGDETGY INQTGDDELA LESLPLKSSD DEENDENLTT TTPVVLIPAT KGSREKHGLS
101: LRKTSVSWAD DVYDPPPSIA SHTRHKKPQQ QKPKSKDSHR KTGKKGQKNK DSSSSRSGKN KKQASRKQHS CEKFDWVTQM PIVAASS
101: LRKTSVSWAD DVYDPPPSIA SHTRHKKPQQ QKPKSKDSHR KTGKKGQKNK DSSSSRSGKN KKQASRKQHS CEKFDWVTQM PIVAASS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTQTPIV LIPAIKGSRE
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.