Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53670.1 | CDX86799 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDX90793 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY05136 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY13242 | AT4G11240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003152.1-P | Field mustard | nucleus | 92.35 | 90.95 |
| CDY07572 | Canola | nucleus | 83.67 | 83.25 |
| CDX78195 | Canola | nucleus | 76.53 | 73.17 |
| CDX73534 | Canola | nucleus | 76.53 | 70.75 |
| AT3G53670.1 | Thale cress | nucleus | 72.96 | 70.44 |
| CDX79736 | Canola | nucleus | 57.65 | 60.75 |
| CDY07787 | Canola | nucleus | 57.65 | 60.11 |
| CDX74957 | Canola | nucleus | 54.08 | 58.24 |
| CDX93375 | Canola | nucleus | 55.1 | 57.75 |
| CDY18441 | Canola | nucleus | 55.1 | 57.45 |
| CDX91366 | Canola | nucleus | 54.59 | 56.91 |
Protein Annotations
| EnsemblPlants:CDY52744 | EnsemblPlantsGene:GSBRNA2T00007686001 | PANTHER:PTHR34952 | ProteinID:CDY52744 | ProteinID:CDY52744.1 | SEG:seg |
| UniParc:UPI0004EE7DC2 | UniProt:A0A078ITI9 | MapMan:35.2 | : | : | : |
Description
BnaA07g37590DBnaA07g37590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITI9]
Coordinates
chrLK033124:-:2476..3699
Molecular Weight (calculated)
20738.4 Da
IEP (calculated)
9.248
GRAVY (calculated)
-1.021
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGGLDY KDAESSSSAS SSNNGSNHIS GTGSDDAQES DGDDSGGYIH QYVNEDSKYI IKPILNSSVD DGEGEDKNLA TAESMTAVTV IPAIKGSREK
101: YGKSLEKLSV SWAEDVYDPP PSLVSHTRSK KLQPQKSKSR DSLKKNGKKG QKGSSNSSSS SSRGSKDKKS SSSRSKHSRD NKFGWATQTS IVAASS
101: YGKSLEKLSV SWAEDVYDPP PSLVSHTRSK KLQPQKSKSR DSLKKNGKKG QKGSSNSSSS SSRGSKDKKS SSSRSKHSRD NKFGWATQTS IVAASS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTQTPIV LIPAIKGSRE
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.