Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53670.1 | CDX86799 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDX90793 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY05136 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY13242 | AT4G11240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78195 | Canola | nucleus | 93.87 | 97.07 |
| Bra007019.1-P | Field mustard | nucleus | 91.98 | 96.53 |
| CDY52744 | Canola | nucleus | 70.75 | 76.53 |
| CDY07572 | Canola | nucleus | 68.87 | 74.11 |
| AT3G53670.1 | Thale cress | nucleus | 65.57 | 68.47 |
| CDX79736 | Canola | nucleus | 54.25 | 61.83 |
| CDX93375 | Canola | nucleus | 53.77 | 60.96 |
| CDY07787 | Canola | nucleus | 53.77 | 60.64 |
| CDX74957 | Canola | nucleus | 51.89 | 60.44 |
| CDY18441 | Canola | nucleus | 53.3 | 60.11 |
| CDX91366 | Canola | nucleus | 52.83 | 59.57 |
Protein Annotations
| EnsemblPlants:CDX73534 | EnsemblPlantsGene:GSBRNA2T00109061001 | ncoils:Coil | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDX73534 |
| ProteinID:CDX73534.1 | SEG:seg | UniParc:UPI0004EB95F8 | MapMan:35.2 | : | : |
Description
BnaC08g24690D
Coordinates
chrLK031799:-:1026517..1028133
Molecular Weight (calculated)
22524.6 Da
IEP (calculated)
8.685
GRAVY (calculated)
-1.013
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGGFDY KNAESHISAS SPNKCSNNGS NHVSVTGSED AQESDGDDSG NIHQYLNEES KDITEPVIPE PLLPLKSSDD EGEDKNLAKD MLSESPQVSA
101: AIVIPAIKGS REKHGKSVEK LSVSWAEDVY DPPPSIVSHT RSKKQQQHQK SKSSLKKSGK KGHKGSSSSS SSSSSSSRGS KDKKSSSSSS RSKHSRDKFG
201: WATQMPIAAA SS
101: AIVIPAIKGS REKHGKSVEK LSVSWAEDVY DPPPSIVSHT RSKKQQQHQK SKSSLKKSGK KGHKGSSSSS SSSSSSSRGS KDKKSSSSSS RSKHSRDKFG
201: WATQMPIAAA SS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTQTPIV LIPAIKGSRE
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.