Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G37480.1 | CDX77309 | AT1G48480.1 | 15618630 |
| AT2G37480.1 | CDY41827 | AT1G48480.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017183.1-P | Field mustard | nucleus | 98.4 | 97.88 |
| CDX93375 | Canola | nucleus | 94.15 | 94.65 |
| CDX91366 | Canola | nucleus | 75.0 | 75.0 |
| CDY07787 | Canola | nucleus | 75.0 | 75.0 |
| CDX74957 | Canola | nucleus | 72.34 | 74.73 |
| CDX79736 | Canola | nucleus | 72.34 | 73.12 |
| AT2G37480.1 | Thale cress | nucleus | 74.47 | 72.16 |
| CDX78195 | Canola | nucleus | 60.64 | 55.61 |
| CDY52744 | Canola | nucleus | 57.45 | 55.1 |
| CDY07572 | Canola | nucleus | 56.91 | 54.31 |
| CDX73534 | Canola | nucleus | 60.11 | 53.3 |
Protein Annotations
| EnsemblPlants:CDY18441 | EnsemblPlantsGene:GSBRNA2T00005437001 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDY18441 | ProteinID:CDY18441.1 |
| SEG:seg | UniParc:UPI0004EDB1CB | UniProt:A0A078FZG7 | MapMan:35.2 | : | : |
Description
BnaA04g21460DBnaA04g21460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZG7]
Coordinates
chrLK032085:-:481547..482476
Molecular Weight (calculated)
20345.3 Da
IEP (calculated)
8.096
GRAVY (calculated)
-1.049
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGKLDF KGAGFEISAS SPTLCSDGSK LSSHAGSDES QESDGDETGY INQTGDDESA LESLTLKSSD DEENDENLTT TTPVILIPAI KGSREKHGLL
101: LRKTSVTWAD DVYDPPPSIA SHTRHKKPQQ QKSKSKDSSH RKTGKKGQKN KDSSSSRSGK NKKQASRKQH SCEKFDWVTQ MPIVAASS
101: LRKTSVTWAD DVYDPPPSIA SHTRHKKPQQ QKSKSKDSSH RKTGKKGQKN KDSSSSRSGK NKKQASRKQH SCEKFDWVTQ MPIVAASS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTQTPIV LIPAIKGSRE
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.