Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53670.1 | CDX86799 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDX90793 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY05136 | AT4G11240.1 | 21798944 |
| AT3G53670.1 | CDY13242 | AT4G11240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52744 | Canola | nucleus | 83.25 | 83.67 |
| CDX78195 | Canola | nucleus | 75.13 | 72.2 |
| CDX73534 | Canola | nucleus | 74.11 | 68.87 |
| AT3G53670.1 | Thale cress | nucleus | 69.54 | 67.49 |
| CDX74957 | Canola | nucleus | 55.33 | 59.89 |
| CDY07787 | Canola | nucleus | 56.85 | 59.57 |
| CDX79736 | Canola | nucleus | 55.84 | 59.14 |
| CDX91366 | Canola | nucleus | 55.84 | 58.51 |
| CDX93375 | Canola | nucleus | 54.82 | 57.75 |
| CDY18441 | Canola | nucleus | 54.31 | 56.91 |
Protein Annotations
| EnsemblPlants:CDY07572 | EnsemblPlantsGene:GSBRNA2T00124649001 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDY07572 | ProteinID:CDY07572.1 |
| SEG:seg | UniParc:UPI0004EDDBD4 | UniProt:A0A078F3E1 | MapMan:35.2 | : | : |
Description
BnaC06g14920DBnaC06g14920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3E1]
Coordinates
chrLK031979:-:808135..809187
Molecular Weight (calculated)
20964.7 Da
IEP (calculated)
9.366
GRAVY (calculated)
-1.124
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGALDY KDAESHLKST SASSSNKCCN NGSGNGSDDA QESDGDDSGG YTHQYVNEES KDITKPILKS SDDDDDKNLA TAESMIAAVT IIPAIKGSRE
101: KHGKSLEKLS VSWAEDVYDP PPSLVSHTRS KKHQPQKSKS RDSLKKNGKK GQKGSSNSSS SSSRGSKDKK SSSSRSKHSR DNKFGWATQT SIVAASS
101: KHGKSLEKLS VSWAEDVYDP PPSLVSHTRS KKHQPQKSKS RDSLKKNGKK GQKGSSNSSS SSSRGSKDKK SSSSRSKHSR DNKFGWATQT SIVAASS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTQTPIV LIPAIKGSRE
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
101: KYGLSLRKSS VSWGADVYDP PPSIASHTVT RSKKQQQKSK SKDNHRKTGK KGQKSKDNSS SRGGSSKDKK QASRKHSRDK FDWVTQMPIV AASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.